HHsearch alignment for GI: 254780456 and conserved domain: PRK06299

>PRK06299 rpsA 30S ribosomal protein S1; Reviewed.
Probab=100.00  E-value=0  Score=582.54  Aligned_cols=418  Identities=34%  Similarity=0.586  Sum_probs=382.2

Q ss_pred             CCCCCEEEEEEEEEECCEEEEEECCCEEEEEEHHHHCCCCCCCC-CCCCCEEEEEEEEEECCCCEEEEEHHHHHH---HH
Q ss_conf             38987799999998199899994796036789975056643556-378987999999974799859996878755---57
Q gi|254780456|r   24 LAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFMGKGQYTP-IKVGDEVEVYVERTENSFGEAVFSRDKALR---EG   99 (576)
Q Consensus        24 ~~~G~iv~G~V~~i~~~~v~vdig~k~~G~i~~~e~~~~~~~~~-~kvGd~i~v~V~~~~~~~g~i~lS~~k~~~---~~   99 (576)
T Consensus       102 ~e~~~~v~g~i~~~vKGG~~V~i~-gv~aFlP~Sq~d~~~v~d~~~~vG~~l~~kIi~~d~~~~~iVvSrr~~lee~~~~  180 (556)
T PRK06299        102 YENGEIVEGVINGKVKGGFTVDLN-GVRAFLPGSQVDVRPVRDTDPLEGKELEFKVIKLDKKRNNIVVSRRAVLEEERAE  180 (556)
T ss_pred             HHCCCEEEEEEEEEECCEEEEEEC-CEEEEEEHHHCCCCCCCCHHHHCCCEEEEEEEEEECCCCEEEEEHHHHHHHHHHH
T ss_conf             758987999999997780999988-9899978588257555661765796699999997523580897328988888888


Q ss_pred             HHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCHHHHHCCCCCCCCCCCCCCC--CCCEEEECCCCCCCCCCCEEECCC
Q ss_conf             589999985289769999999967955999744020000011234543334555--553023111335432331122121
Q gi|254780456|r  100 VWEKIEAKFRAGERIEGVIFNQVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPL--MHEPQLFEILKMDKRRGNIVVSRR  177 (576)
Q Consensus       100 ~~~~i~~a~~~g~~v~g~V~~~~k~G~~V~i~gi~~FlP~s~~~~~~~~d~~~~--vG~~i~~~Ii~~d~~~~~ivvS~k  177 (576)
T Consensus       181 ~~~~~~~~l~~G~vv~G~V~~i~~~GaFVdlggvdGllhiseiSw~rv~~p~~~~~~G~~v~vkVl~id~e~~risLslK  260 (556)
T PRK06299        181 EREELLENLEEGQVVEGVVKNITDYGAFVDLGGVDGLLHITDISWKRVNHPSEVVNVGDEVKVKVLKFDKEKKRVSLGLK  260 (556)
T ss_pred             HHHHHHHHCCCCCEEEEEEEEEECCCEEEEECCEEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEEEEEE
T ss_conf             89999985247972789999970575899958958999856715566699899266898899999988265638999970


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEC-CCEEEEEEEECCC-CCCCCCCEEECCCCEEEEEEEEEC
Q ss_conf             11222221211100011222330246788753147177744-8315788642024-444433113326972589999874
Q gi|254780456|r  178 AVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLS-GVDGLLHVTDIAW-HRILHPSKVLSIGQQVKVKIIRIN  255 (576)
Q Consensus       178 ~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~-g~~g~i~~~~ls~-~~~~~~~~~~~~G~~v~~~Vl~~d  255 (576)
T Consensus       261 ~l~~----dPw~~~~~~~~~G~~v~g~V~~i~~fGafVel~~gveGlvhiSelsw~~~~~~p~~~~~~G~~V~~kIl~id  336 (556)
T PRK06299        261 QLGE----DPWEAIEKKYPVGSKVKGKVTNITDYGAFVELEEGIEGLVHVSEMSWTKKNKHPSKVVSVGQEVEVMVLEID  336 (556)
T ss_pred             CCCC----CHHHHHHHHCCCCCEEEEEEEEECCCEEEEEECCCCEEEEEHHHCCCCCCCCCHHHHCCCCCEEEEEEEEEC
T ss_conf             3567----855767864789998999999982760799954995899887871675444797895447977999999972


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEE
Q ss_conf             76527998521555432100000004896658999981596699985142000000111101113557421003784579
Q gi|254780456|r  256 QETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVE  335 (576)
Q Consensus       256 ~~~~~i~lslK~l~~dp~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~  335 (576)
T Consensus       337 ~~~~risLS~K~~~~nPw~~~~~~~~vG~~v~g~V~~i~~fG~fv~l~~gv~GlvH~sdlSW~~~~~~~~~~~k~Gd~v~  416 (556)
T PRK06299        337 EEKRRISLGLKQCKENPWEEFAEKYPVGDVVEGKIKNITDFGAFVGLEGGIDGLVHLSDISWDKKGEEAVELYKKGDEVE  416 (556)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEHHHCCCCCCCCCHHHHCCCCCEEE
T ss_conf             44368888632366797899986355564799999996643699985277323778535455556410566426896699


Q ss_pred             EEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCCCCHHHHHHH
Q ss_conf             99998621550478752034543210000012222213699999850169997068841354005530012200123421
Q gi|254780456|r  336 VVILEVNPARKRISLGLKQALINPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEY  415 (576)
Q Consensus       336 ~~Vl~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~~~~~~~~~~  415 (576)
T Consensus       417 vkVL~iD~e~~rIsLgiKql~~dPw~~~~~~~k~G~iv~g~V~~i~~~G~fV~l~~gieglI~~sels~~-~~~~~~~~~  495 (556)
T PRK06299        417 AVVLKVDVEKERISLGIKQLEEDPFEEFAKKHKKGSIVTGTVTEVKDKGAFVELADGVEGFIRASELSRD-RVEDATEVL  495 (556)
T ss_pred             EEEEEECCCCCEEEEEEHHCCCCCHHHHHHHCCCCCEEEEEEEEEECCCEEEEECCCEEEEEEHHHCCCH-HHHCCCCCC
T ss_conf             9999981667679887043127816878763899899999999997895699938990999997996800-233621116


Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCHHHHHCCCC
Q ss_conf             11234226885215654553201132210111
Q gi|254780456|r  416 AKGDIVKAVVLDIDVGKERISLGVKQLSGSAP  447 (576)
Q Consensus       416 k~G~~i~~~Vl~id~~~~~i~LS~K~l~~~~~  447 (576)
T Consensus       496 ~~Gd~v~~~Ii~id~e~rkI~LSiK~le~~~e  527 (556)
T PRK06299        496 KVGDEVEAKVINIDRKNRRISLSIKALDEAEE  527 (556)
T ss_pred             CCCCEEEEEEEEECCCCCEEEEEHHHHHHHHH
T ss_conf             89998999999982777999987159555567