HHsearch alignment for GI: 254780456 and conserved domain: PRK06299
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed.
Probab=100.00 E-value=0 Score=582.54 Aligned_cols=418 Identities=34% Similarity=0.586 Sum_probs=382.2
Q ss_pred CCCCCEEEEEEEEEECCEEEEEECCCEEEEEEHHHHCCCCCCCC-CCCCCEEEEEEEEEECCCCEEEEEHHHHHH---HH
Q ss_conf 38987799999998199899994796036789975056643556-378987999999974799859996878755---57
Q gi|254780456|r 24 LAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFMGKGQYTP-IKVGDEVEVYVERTENSFGEAVFSRDKALR---EG 99 (576)
Q Consensus 24 ~~~G~iv~G~V~~i~~~~v~vdig~k~~G~i~~~e~~~~~~~~~-~kvGd~i~v~V~~~~~~~g~i~lS~~k~~~---~~ 99 (576)
T Consensus 102 ~e~~~~v~g~i~~~vKGG~~V~i~-gv~aFlP~Sq~d~~~v~d~~~~vG~~l~~kIi~~d~~~~~iVvSrr~~lee~~~~ 180 (556)
T PRK06299 102 YENGEIVEGVINGKVKGGFTVDLN-GVRAFLPGSQVDVRPVRDTDPLEGKELEFKVIKLDKKRNNIVVSRRAVLEEERAE 180 (556)
T ss_pred HHCCCEEEEEEEEEECCEEEEEEC-CEEEEEEHHHCCCCCCCCHHHHCCCEEEEEEEEEECCCCEEEEEHHHHHHHHHHH
T ss_conf 758987999999997780999988-9899978588257555661765796699999997523580897328988888888
Q ss_pred HHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCHHHHHCCCCCCCCCCCCCCC--CCCEEEECCCCCCCCCCCEEECCC
Q ss_conf 589999985289769999999967955999744020000011234543334555--553023111335432331122121
Q gi|254780456|r 100 VWEKIEAKFRAGERIEGVIFNQVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPL--MHEPQLFEILKMDKRRGNIVVSRR 177 (576)
Q Consensus 100 ~~~~i~~a~~~g~~v~g~V~~~~k~G~~V~i~gi~~FlP~s~~~~~~~~d~~~~--vG~~i~~~Ii~~d~~~~~ivvS~k 177 (576)
T Consensus 181 ~~~~~~~~l~~G~vv~G~V~~i~~~GaFVdlggvdGllhiseiSw~rv~~p~~~~~~G~~v~vkVl~id~e~~risLslK 260 (556)
T PRK06299 181 EREELLENLEEGQVVEGVVKNITDYGAFVDLGGVDGLLHITDISWKRVNHPSEVVNVGDEVKVKVLKFDKEKKRVSLGLK 260 (556)
T ss_pred HHHHHHHHCCCCCEEEEEEEEEECCCEEEEECCEEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEECCCCCEEEEEEE
T ss_conf 89999985247972789999970575899958958999856715566699899266898899999988265638999970
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEC-CCEEEEEEEECCC-CCCCCCCEEECCCCEEEEEEEEEC
Q ss_conf 11222221211100011222330246788753147177744-8315788642024-444433113326972589999874
Q gi|254780456|r 178 AVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLS-GVDGLLHVTDIAW-HRILHPSKVLSIGQQVKVKIIRIN 255 (576)
Q Consensus 178 ~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~-g~~g~i~~~~ls~-~~~~~~~~~~~~G~~v~~~Vl~~d 255 (576)
T Consensus 261 ~l~~----dPw~~~~~~~~~G~~v~g~V~~i~~fGafVel~~gveGlvhiSelsw~~~~~~p~~~~~~G~~V~~kIl~id 336 (556)
T PRK06299 261 QLGE----DPWEAIEKKYPVGSKVKGKVTNITDYGAFVELEEGIEGLVHVSEMSWTKKNKHPSKVVSVGQEVEVMVLEID 336 (556)
T ss_pred CCCC----CHHHHHHHHCCCCCEEEEEEEEECCCEEEEEECCCCEEEEEHHHCCCCCCCCCHHHHCCCCCEEEEEEEEEC
T ss_conf 3567----855767864789998999999982760799954995899887871675444797895447977999999972
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEE
Q ss_conf 76527998521555432100000004896658999981596699985142000000111101113557421003784579
Q gi|254780456|r 256 QETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVE 335 (576)
Q Consensus 256 ~~~~~i~lslK~l~~dp~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~ 335 (576)
T Consensus 337 ~~~~risLS~K~~~~nPw~~~~~~~~vG~~v~g~V~~i~~fG~fv~l~~gv~GlvH~sdlSW~~~~~~~~~~~k~Gd~v~ 416 (556)
T PRK06299 337 EEKRRISLGLKQCKENPWEEFAEKYPVGDVVEGKIKNITDFGAFVGLEGGIDGLVHLSDISWDKKGEEAVELYKKGDEVE 416 (556)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEHHHCCCCCCCCCHHHHCCCCCEEE
T ss_conf 44368888632366797899986355564799999996643699985277323778535455556410566426896699
Q ss_pred EEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCCCCHHHHHHH
Q ss_conf 99998621550478752034543210000012222213699999850169997068841354005530012200123421
Q gi|254780456|r 336 VVILEVNPARKRISLGLKQALINPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEY 415 (576)
Q Consensus 336 ~~Vl~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~~~~~~~~~~ 415 (576)
T Consensus 417 vkVL~iD~e~~rIsLgiKql~~dPw~~~~~~~k~G~iv~g~V~~i~~~G~fV~l~~gieglI~~sels~~-~~~~~~~~~ 495 (556)
T PRK06299 417 AVVLKVDVEKERISLGIKQLEEDPFEEFAKKHKKGSIVTGTVTEVKDKGAFVELADGVEGFIRASELSRD-RVEDATEVL 495 (556)
T ss_pred EEEEEECCCCCEEEEEEHHCCCCCHHHHHHHCCCCCEEEEEEEEEECCCEEEEECCCEEEEEEHHHCCCH-HHHCCCCCC
T ss_conf 9999981667679887043127816878763899899999999997895699938990999997996800-233621116
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCHHHHHCCCC
Q ss_conf 11234226885215654553201132210111
Q gi|254780456|r 416 AKGDIVKAVVLDIDVGKERISLGVKQLSGSAP 447 (576)
Q Consensus 416 k~G~~i~~~Vl~id~~~~~i~LS~K~l~~~~~ 447 (576)
T Consensus 496 ~~Gd~v~~~Ii~id~e~rkI~LSiK~le~~~e 527 (556)
T PRK06299 496 KVGDEVEAKVINIDRKNRRISLSIKALDEAEE 527 (556)
T ss_pred CCCCEEEEEEEEECCCCCEEEEEHHHHHHHHH
T ss_conf 89998999999982777999987159555567