HHsearch alignment for GI: 254780456 and conserved domain: PRK07400
>PRK07400 30S ribosomal protein S1; Reviewed.
Probab=100.00 E-value=0 Score=380.76 Aligned_cols=288 Identities=24% Similarity=0.420 Sum_probs=259.6
Q ss_pred CCCCCCCCCEEEEEEEEEECCCCEEEECC-CEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCCEEEEEECCCC
Q ss_conf 00112223302467887531471777448-31578864202444443311332697258999987476527998521555
Q gi|254780456|r 191 IVQKLEEGQVIEGTVKNITDYGVFVDLSG-VDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMKQLE 269 (576)
Q Consensus 191 ~~~~l~~G~~v~g~V~~i~~~g~~V~~~g-~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~lslK~l~ 269 (576)
T Consensus 25 ~~~~~k~GdiVeG~V~~I~~~~v~VdiG~k~eG~i~~~E~s~~~~~~~~e~~~vGd~iev~V~~~~~~~g~i~LS~k~~~ 104 (314)
T PRK07400 25 YDYHFKPGDIVNGTVFSLEPKGALIDIGAKTAAFMPLQEMSINRVEGPSEVLQPGETREFFILSEENEDGQLTLSIRRIE 104 (314)
T ss_pred HHCCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECHHH
T ss_conf 52369999989999999979989999779807999999936665689430135897699999998568896899860432
Q ss_pred -CCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEEEEECCCCEE
Q ss_conf -4321000000048966589999815966999851420000001111011135574210037845799999862155047
Q gi|254780456|r 270 -KNPWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKRI 348 (576)
Q Consensus 270 -~dp~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl~id~~~~~i 348 (576)
T Consensus 105 ~~~~w~~l~~~~~~~~~V~gkV~~~~kgG~~V~i~-gl~gFiP~Sqls~~~----~~~~~-vG~~~~~kIieid~~~~ri 178 (314)
T PRK07400 105 YMRAWERVRQLQKEDATVRSEVFATNRGGALVRIE-GLRGFIPGSHISTRK----PKEEL-VGEELPLKFLEVDEERNRL 178 (314)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEC-CEEEEEEHHHCCCCC----CCHHH-CCCEEEEEEEEEECCCCCE
T ss_conf 12069999977325987999999996384899976-865685524516355----63210-6976889999971566824
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCCCCHHHHHHHCCCCCCEEEEEEC
Q ss_conf 87520345432100000122222136999998501699970688413540055300122001234211123422688521
Q gi|254780456|r 349 SLGLKQALINPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEYAKGDIVKAVVLDI 428 (576)
Q Consensus 349 ~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~~~~~~~~~~k~G~~i~~~Vl~i 428 (576)
T Consensus 179 vlS~r~~l~---e~~~~~l~vG~vv~G~V~~I~~fGaFVdig-GvdGLlHiSeiSw~r-v~~p~dv~kvGd~V~vkVi~i 253 (314)
T PRK07400 179 VLSHRRALV---ERKMNRLEVGEVVVGTVRGIKPYGAFIDIG-GVSGLLHISEISHEH-IETPHSVFNVNDQMKVMIIDL 253 (314)
T ss_pred EEEEEHHHH---HHHHHCCCCCCEEEEEEEEEECEEEEEEEC-CCEEEEEHHHCCCCC-CCCHHHHCCCCCEEEEEEEEE
T ss_conf 899833320---136750889988999999996408899978-918999814616544-489878267999999999997
Q ss_pred CCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCC
Q ss_conf 565455320113221011100001100478987999999970890899961779849999974718
Q gi|254780456|r 429 DVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLS 494 (576)
Q Consensus 429 d~~~~~i~LS~K~l~~~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is 494 (576)
T Consensus 254 D~e~~rIsLSiK~l~~dPwd~i~--~K~kvgd~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 314 (314)
T PRK07400 254 DAERGRISLSTKQLEPEPGDMLT--DPQKVFDKAE-EMAAKYRQMLLEQA--EGGEEPIEAAAELE 314 (314)
T ss_pred CCCCCEEEEEHHHCCCCCHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHH--CCCHHHHHHHHCCC
T ss_conf 38898899776665558477762--5777658999-99999998876523--14413100121079