HHsearch alignment for GI: 254780456 and conserved domain: PRK08563

>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional.
Probab=98.43  E-value=1.7e-06  Score=56.58  Aligned_cols=71  Identities=28%  Similarity=0.526  Sum_probs=33.4

Q ss_pred             CCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCCC----------CHHHHHHHCCCCCCEEEEEECC-----CCCCC
Q ss_conf             22136999998501699970688413540055300122----------0012342111234226885215-----65455
Q gi|254780456|r  370 GTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRP----------GEKVIAEYAKGDIVKAVVLDID-----VGKER  434 (576)
Q Consensus       370 G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~~----------~~~~~~~~k~G~~i~~~Vl~id-----~~~~~  434 (576)
T Consensus        82 ~EVv~g~V~~~~~~G~fv~~Gp-~d~~vh~sqi~dd~~~fD~~~~~~ig~~s~~~i~~Gd~VR~RIv~vs~~~~~~~~~k  160 (182)
T PRK08563         82 QEVVEGEVVEVVEFGAFVRIGP-VDGLLHISQIMDDYISYDEKNGALIGKESKRTLKVGDVVRARIVAVSLNEREPRDSK  160 (182)
T ss_pred             CCEEEEEEEEEECCEEEEEEEC-CCEEEEHHHCCCCCCEECCCCCEEEEECCCEEECCCCEEEEEEEEEECCCCCCCCCE
T ss_conf             8489999999966769999846-611760999477762383656519990686498289989999999771888877662


Q ss_pred             CCCCHHH
Q ss_conf             3201132
Q gi|254780456|r  435 ISLGVKQ  441 (576)
Q Consensus       435 i~LS~K~  441 (576)
T Consensus       161 IglTmrq  167 (182)
T PRK08563        161 IGLTMRQ  167 (182)
T ss_pred             EEEEECC
T ss_conf             6689538