HHsearch alignment for GI: 254780456 and conserved domain: PRK11642
>PRK11642 exoribonuclease R; Provisional.
Probab=98.91 E-value=7.1e-09 Score=71.05 Aligned_cols=73 Identities=30% Similarity=0.558 Sum_probs=62.2
Q ss_pred CCCCCEEEEEEEEEEEEEEEEECC-CCEEEEEHHHHHCCCC----------CHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf 222213699999850169997068-8413540055300122----------00123421112342268852156545532
Q gi|254780456|r 368 PPGTEVEGEVKNKTDFGLFIGLDE-HLDGMIHLSDLDWNRP----------GEKVIAEYAKGDIVKAVVLDIDVGKERIS 436 (576)
Q Consensus 368 ~~G~~v~g~V~~v~~~g~~V~l~~-~i~g~i~~~dls~~~~----------~~~~~~~~k~G~~i~~~Vl~id~~~~~i~ 436 (576)
T Consensus 642 ~iGe~f~G~IsgVt~fG~FVeL~~~~vEGLVhvs~L~dD~Y~yd~~~~~LvG~rtg~~y~lGD~V~V~v~~Vd~~~~qID 721 (813)
T PRK11642 642 QVGNVFKGVIASVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDERKID 721 (813)
T ss_pred HCCCEEEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCEEECCCEEEEEEEEECHHHCEEE
T ss_conf 44997889996076100899954886378888012888318983357889865079788269979999999742137355
Q ss_pred CCHH
Q ss_conf 0113
Q gi|254780456|r 437 LGVK 440 (576)
Q Consensus 437 LS~K 440 (576)
T Consensus 722 feLv 725 (813)
T PRK11642 722 FSLI 725 (813)
T ss_pred EEEE
T ss_conf 8982