HHsearch alignment for GI: 254780456 and conserved domain: PRK11642

>PRK11642 exoribonuclease R; Provisional.
Probab=98.91  E-value=7.1e-09  Score=71.05  Aligned_cols=73  Identities=30%  Similarity=0.558  Sum_probs=62.2

Q ss_pred             CCCCCEEEEEEEEEEEEEEEEECC-CCEEEEEHHHHHCCCC----------CHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf             222213699999850169997068-8413540055300122----------00123421112342268852156545532
Q gi|254780456|r  368 PPGTEVEGEVKNKTDFGLFIGLDE-HLDGMIHLSDLDWNRP----------GEKVIAEYAKGDIVKAVVLDIDVGKERIS  436 (576)
Q Consensus       368 ~~G~~v~g~V~~v~~~g~~V~l~~-~i~g~i~~~dls~~~~----------~~~~~~~~k~G~~i~~~Vl~id~~~~~i~  436 (576)
T Consensus       642 ~iGe~f~G~IsgVt~fG~FVeL~~~~vEGLVhvs~L~dD~Y~yd~~~~~LvG~rtg~~y~lGD~V~V~v~~Vd~~~~qID  721 (813)
T PRK11642        642 QVGNVFKGVIASVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDERKID  721 (813)
T ss_pred             HCCCEEEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCEEECCCEEEEEEEEECHHHCEEE
T ss_conf             44997889996076100899954886378888012888318983357889865079788269979999999742137355


Q ss_pred             CCHH
Q ss_conf             0113
Q gi|254780456|r  437 LGVK  440 (576)
Q Consensus       437 LS~K  440 (576)
T Consensus       722 feLv  725 (813)
T PRK11642        722 FSLI  725 (813)
T ss_pred             EEEE
T ss_conf             8982