HHsearch alignment for GI: 254780456 and conserved domain: PRK12269
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional.
Probab=100.00 E-value=0 Score=546.96 Aligned_cols=416 Identities=27% Similarity=0.523 Sum_probs=290.0
Q ss_pred CCCCCEEEEEEEEEE--CCEEEEEECCCEEEEEEHHHHCCCCCC-CCCCCCCEEEEEEEEEECC-----CCEEEEEHHHH
Q ss_conf 389877999999981--998999947960367899750566435-5637898799999997479-----98599968787
Q gi|254780456|r 24 LAENCVTKGIVVGLE--KDTVVVDVGLKFEGRIPRREFMGKGQY-TPIKVGDEVEVYVERTENS-----FGEAVFSRDKA 95 (576)
Q Consensus 24 ~~~G~iv~G~V~~i~--~~~v~vdig~k~~G~i~~~e~~~~~~~-~~~kvGd~i~v~V~~~~~~-----~g~i~lS~~k~ 95 (576)
T Consensus 396 ~~~~~~v~G~i~~~~~vkgG~~Vdl~~gv~AFLPgSqvd~rpv~d~~~~~g~~~~f~iik~~~~~~~r~~~NiVvSRrav 475 (863)
T PRK12269 396 ERDGTPVEGRIVRLTEKKSGFEVDLGAGMMAFLPISQSDCQKVDAPESLIGLTSKFYIERISQSKQHRGNDNIVINRRRY 475 (863)
T ss_pred HHCCCEEEEEEEECCCCCCCEEEECCCCCEEECCHHHCCCEECCCCHHHCCCCCCEEEEEEEHHHHCCCCCCEEEECHHH
T ss_conf 75699079999744610453799858896786766564711368863215887415999953133126778889976798
Q ss_pred H---HHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCCHHHHHCCCCCCCCCCCCCCC--CCCEEEECCCCCCCCCC
Q ss_conf 5---557589999985289769999999967955999744020000011234543334555--55302311133543233
Q gi|254780456|r 96 L---REGVWEKIEAKFRAGERIEGVIFNQVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPL--MHEPQLFEILKMDKRRG 170 (576)
Q Consensus 96 ~---~~~~~~~i~~a~~~g~~v~g~V~~~~k~G~~V~i~gi~~FlP~s~~~~~~~~d~~~~--vG~~i~~~Ii~~d~~~~ 170 (576)
T Consensus 476 lEe~~~~~r~~~l~~l~eG~vv~G~VKnitdyGaFvDLGGvDGLLHitDiSW~Rv~hPse~~~vG~~i~vkVlk~D~e~~ 555 (863)
T PRK12269 476 LEERARQAREEFFNSVHIEDSVSGVVKSFTSFGAFIDLGGFDGLLHVNDMSWGHVARPREFVKKGQTIELKVIRLDQAEK 555 (863)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCHHHHHCCCCEEEEEEEEECCCCC
T ss_conf 88888999999986443687788999831564058961771014662111357889989971279779999985256545
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEC-CCEEEEEEEECCC-CCCCCCCEEECCCCEEE
Q ss_conf 112212111222221211100011222330246788753147177744-8315788642024-44443311332697258
Q gi|254780456|r 171 NIVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLS-GVDGLLHVTDIAW-HRILHPSKVLSIGQQVK 248 (576)
Q Consensus 171 ~ivvS~k~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~-g~~g~i~~~~ls~-~~~~~~~~~~~~G~~v~ 248 (576)
T Consensus 556 riSLglKQl~~----dPW~~i~~ky~vg~~v~gkVtnitdyGaFVEle~GiEGLvHvSEmsWtkk~~~P~k~v~~GdeVe 631 (863)
T PRK12269 556 RINLSLKHFQP----DPWLEFENKFGVNDVVKGRVTKIADFGAFIELAEGIEGLAHISEFSWVKKTSKPSDMVKIGDEVE 631 (863)
T ss_pred EEEECCCCCCC----CCHHHHHHHCCCCCEEEEEEEEEECCCEEEEECCCCEEEEEEHHHCCCCCCCCHHHCCCCCCEEE
T ss_conf 14311321778----97678886388999899999997446569996389257887025020236799798076897799
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEE
Q ss_conf 99998747652799852155543210000000489665899998159669998514200000011110111355742100
Q gi|254780456|r 249 VKIIRINQETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKIL 328 (576)
Q Consensus 249 ~~Vl~~d~~~~~i~lslK~l~~dp~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~ 328 (576)
T Consensus 632 v~VLeID~ekrRISLg~Kq~~~NPW~~~~~ky~vG~~v~g~I~nitdFGiFv~le~gIDGlvH~sDlSW~~~~~~~~~~~ 711 (863)
T PRK12269 632 CMILGYDIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRRIVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHEL 711 (863)
T ss_pred EEEEEEECCCCEEEEEECCCCCCCHHHHHHHCCCCCEEEEEEEEEECEEEEEECCCCCEEEEEHHHCCCCCCCCCHHHHC
T ss_conf 99998803226785441016688499999768998989999998533089997479936789821067678772656625
Q ss_pred CCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCCCC
Q ss_conf 37845799999862155047875203454321000001222221369999985016999706884135400553001220
Q gi|254780456|r 329 SVGQQVEVVILEVNPARKRISLGLKQALINPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPG 408 (576)
Q Consensus 329 ~~G~~v~~~Vl~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~~~ 408 (576)
T Consensus 712 kkGd~ve~kVL~Id~ekeRIsLGiKQL~~DP~~~f~~~~~~G~iVtg~V~~v~d~G~~V~l~~gieg~I~~s~ls~~-r~ 790 (863)
T PRK12269 712 EVGKEIECMVIECDPQARRIRLGVKQLSDNPWQVFANAYGVGSTVEGEVSSVTDFGIFVRVPGGVEGLVRKQHLVEN-RD 790 (863)
T ss_pred CCCCEEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHCCCCCEEEEEEEEEECCCEEEEECCCEEEEEEHHHHHHH-HH
T ss_conf 78987999999974765777740100657878999863899898999999995694799908991699898981120-33
Q ss_pred HHHH---HHHCCCCCCEEEEEECCCCCCCCCCCHHHHHC
Q ss_conf 0123---42111234226885215654553201132210
Q gi|254780456|r 409 EKVI---AEYAKGDIVKAVVLDIDVGKERISLGVKQLSG 444 (576)
Q Consensus 409 ~~~~---~~~k~G~~i~~~Vl~id~~~~~i~LS~K~l~~ 444 (576)
T Consensus 791 e~~~~~~~rFavGd~vdA~I~~iD~k~RkI~LSIK~le~ 829 (863)
T PRK12269 791 GDPGEALRKYAVGDRVKAVIVDMNVKDRKVAFSVRDYQR 829 (863)
T ss_pred HCHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEHHHHHH
T ss_conf 184666423589987999999884666779987789776