HHsearch alignment for GI: 254780456 and conserved domain: PRK12327
>PRK12327 nusA transcription elongation factor NusA; Provisional.
Probab=98.13 E-value=1.2e-06 Score=57.58 Aligned_cols=64 Identities=23% Similarity=0.487 Sum_probs=36.1
Q ss_pred CCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCC--EEEEEE
Q ss_conf 2233024678875314717774483157886420244444331133269725899998747652--799852
Q gi|254780456|r 196 EEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETH--RISLGM 265 (576)
Q Consensus 196 ~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~--~i~lsl 265 (576)
T Consensus 133 r~GeiV~G~V~r~~~~~~~Vdlg~~ea~LP~~eq------ip~E~~~~Gdrika~i~~V~~~~kgp~I~lSR 198 (353)
T PRK12327 133 REGDIVTGTVQRDDNRFVYVNLGKIEAVLPPAEQ------IPGETYKHGDRIKVYVVKVEKTTKGPQIFVSR 198 (353)
T ss_pred HCCCEEEEEEEEECCCCEEEEECCEEEECCHHHC------CCCCCCCCCCEEEEEEEEEEECCCCCEEEEEC
T ss_conf 4396699999997588589997882464687986------99877799997999999999759974799964