HHsearch alignment for GI: 254780456 and conserved domain: PRK12327

>PRK12327 nusA transcription elongation factor NusA; Provisional.
Probab=98.13  E-value=1.2e-06  Score=57.58  Aligned_cols=64  Identities=23%  Similarity=0.487  Sum_probs=36.1

Q ss_pred             CCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCC--EEEEEE
Q ss_conf             2233024678875314717774483157886420244444331133269725899998747652--799852
Q gi|254780456|r  196 EEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETH--RISLGM  265 (576)
Q Consensus       196 ~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~--~i~lsl  265 (576)
T Consensus       133 r~GeiV~G~V~r~~~~~~~Vdlg~~ea~LP~~eq------ip~E~~~~Gdrika~i~~V~~~~kgp~I~lSR  198 (353)
T PRK12327        133 REGDIVTGTVQRDDNRFVYVNLGKIEAVLPPAEQ------IPGETYKHGDRIKVYVVKVEKTTKGPQIFVSR  198 (353)
T ss_pred             HCCCEEEEEEEEECCCCEEEEECCEEEECCHHHC------CCCCCCCCCCEEEEEEEEEEECCCCCEEEEEC
T ss_conf             4396699999997588589997882464687986------99877799997999999999759974799964