HHsearch alignment for GI: 254780456 and conserved domain: PRK12328
>PRK12328 nusA transcription elongation factor NusA; Provisional.
Probab=98.29 E-value=1.9e-05 Score=50.28 Aligned_cols=64 Identities=23% Similarity=0.373 Sum_probs=42.6
Q ss_pred CCCCEEEEEEEEECCC-EEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEEEEECCCC---EEEEEE
Q ss_conf 4896658999981596-69998514200000011110111355742100378457999998621550---478752
Q gi|254780456|r 281 VEGSKVSGVVTNLTDY-GVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARK---RISLGL 352 (576)
Q Consensus 281 ~~G~~v~g~V~~v~~~-G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl~id~~~~---~i~lS~ 352 (576)
T Consensus 137 r~GeiV~G~V~r~~~~~~~~vdlg-~~ea~Lp~~eq-------ip~E~y~~Gdrik~~i~~V~~~~~~gpqI~lSR 204 (375)
T PRK12328 137 KVGSVVFGTVVRVDNEENTFIEID-EIRAILPMKNR-------IKGEKFKVGDVVKAVLRRVKIDKKNGIKLELSR 204 (375)
T ss_pred HCCCEEEEEEEEEECCCCEEEECC-CCEEEECHHHC-------CCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEC
T ss_conf 429489999999965884899739-81798027763-------886558999869999999872789995899967