HHsearch alignment for GI: 254780456 and conserved domain: PRK12328

>PRK12328 nusA transcription elongation factor NusA; Provisional.
Probab=98.29  E-value=1.9e-05  Score=50.28  Aligned_cols=64  Identities=23%  Similarity=0.373  Sum_probs=42.6

Q ss_pred             CCCCEEEEEEEEECCC-EEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEEEEECCCC---EEEEEE
Q ss_conf             4896658999981596-69998514200000011110111355742100378457999998621550---478752
Q gi|254780456|r  281 VEGSKVSGVVTNLTDY-GVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARK---RISLGL  352 (576)
Q Consensus       281 ~~G~~v~g~V~~v~~~-G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl~id~~~~---~i~lS~  352 (576)
T Consensus       137 r~GeiV~G~V~r~~~~~~~~vdlg-~~ea~Lp~~eq-------ip~E~y~~Gdrik~~i~~V~~~~~~gpqI~lSR  204 (375)
T PRK12328        137 KVGSVVFGTVVRVDNEENTFIEID-EIRAILPMKNR-------IKGEKFKVGDVVKAVLRRVKIDKKNGIKLELSR  204 (375)
T ss_pred             HCCCEEEEEEEEEECCCCEEEECC-CCEEEECHHHC-------CCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEC
T ss_conf             429489999999965884899739-81798027763-------886558999869999999872789995899967