HHsearch alignment for GI: 254780456 and conserved domain: PRK12328

>PRK12328 nusA transcription elongation factor NusA; Provisional.
Probab=98.18  E-value=2.2e-06  Score=55.97  Aligned_cols=109  Identities=17%  Similarity=0.253  Sum_probs=64.7

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCEE-ECCCCCC-CCCCCCCCCCCCCC--CCCCCEEEEEEEEEECCC-CEEEECCCEEE
Q ss_conf             3455555302311133543233112-2121112-22221211100011--222330246788753147-17774483157
Q gi|254780456|r  149 DVTPLMHEPQLFEILKMDKRRGNIV-VSRRAVL-EESRAEQRSEIVQK--LEEGQVIEGTVKNITDYG-VFVDLSGVDGL  223 (576)
Q Consensus       149 d~~~~vG~~i~~~Ii~~d~~~~~iv-vS~k~~l-~~~~~~~~~~~~~~--l~~G~~v~g~V~~i~~~g-~~V~~~g~~g~  223 (576)
T Consensus        88 ~~~~~iGd~i~~~i~~~~--FgRiAaq~AKQvi~QkireaEr~~i~~efk~r~GeiV~G~V~r~~~~~~~~vdlg~~ea~  165 (375)
T PRK12328         88 DPDVEIGDELSYELSLEN--MGRTAANTLFKELEYHIQRLLEDSIFEKYKEKVGSVVFGTVVRVDNEENTFIEIDEIRAI  165 (375)
T ss_pred             CCCCCCCCEEEEECCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEECCCCEEE
T ss_conf             899841788998428445--418999999999999999999999999998642948999999996588489973981798


Q ss_pred             EEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCC---CEEEEEE
Q ss_conf             88642024444433113326972589999874765---2799852
Q gi|254780456|r  224 LHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQET---HRISLGM  265 (576)
Q Consensus       224 i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~---~~i~lsl  265 (576)
T Consensus       166 Lp~~eq------ip~E~y~~Gdrik~~i~~V~~~~~~gpqI~lSR  204 (375)
T PRK12328        166 LPMKNR------IKGEKFKVGDVVKAVLRRVKIDKKNGIKLELSR  204 (375)
T ss_pred             ECHHHC------CCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEC
T ss_conf             027763------886558999869999999872789995899967