HHsearch alignment for GI: 254780456 and conserved domain: PRK12328
>PRK12328 nusA transcription elongation factor NusA; Provisional.
Probab=98.18 E-value=2.2e-06 Score=55.97 Aligned_cols=109 Identities=17% Similarity=0.253 Sum_probs=64.7
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCEE-ECCCCCC-CCCCCCCCCCCCCC--CCCCCEEEEEEEEEECCC-CEEEECCCEEE
Q ss_conf 3455555302311133543233112-2121112-22221211100011--222330246788753147-17774483157
Q gi|254780456|r 149 DVTPLMHEPQLFEILKMDKRRGNIV-VSRRAVL-EESRAEQRSEIVQK--LEEGQVIEGTVKNITDYG-VFVDLSGVDGL 223 (576)
Q Consensus 149 d~~~~vG~~i~~~Ii~~d~~~~~iv-vS~k~~l-~~~~~~~~~~~~~~--l~~G~~v~g~V~~i~~~g-~~V~~~g~~g~ 223 (576)
T Consensus 88 ~~~~~iGd~i~~~i~~~~--FgRiAaq~AKQvi~QkireaEr~~i~~efk~r~GeiV~G~V~r~~~~~~~~vdlg~~ea~ 165 (375)
T PRK12328 88 DPDVEIGDELSYELSLEN--MGRTAANTLFKELEYHIQRLLEDSIFEKYKEKVGSVVFGTVVRVDNEENTFIEIDEIRAI 165 (375)
T ss_pred CCCCCCCCEEEEECCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEECCCCEEE
T ss_conf 899841788998428445--418999999999999999999999999998642948999999996588489973981798
Q ss_pred EEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCC---CEEEEEE
Q ss_conf 88642024444433113326972589999874765---2799852
Q gi|254780456|r 224 LHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQET---HRISLGM 265 (576)
Q Consensus 224 i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~---~~i~lsl 265 (576)
T Consensus 166 Lp~~eq------ip~E~y~~Gdrik~~i~~V~~~~~~gpqI~lSR 204 (375)
T PRK12328 166 LPMKNR------IKGEKFKVGDVVKAVLRRVKIDKKNGIKLELSR 204 (375)
T ss_pred ECHHHC------CCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEC
T ss_conf 027763------886558999869999999872789995899967