HHsearch alignment for GI: 254780456 and conserved domain: PRK12329
>PRK12329 nusA transcription elongation factor NusA; Provisional.
Probab=98.03 E-value=8.5e-05 Score=46.35 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=36.8
Q ss_pred CCCCEEEEEEEEECCCEEEEEECCC-----CEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEEEEEC-CC--CEEEEE
Q ss_conf 4896658999981596699985142-----00000011110111355742100378457999998621-55--047875
Q gi|254780456|r 281 VEGSKVSGVVTNLTDYGVFVELQSG-----IEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNP-AR--KRISLG 351 (576)
Q Consensus 281 ~~G~~v~g~V~~v~~~G~~V~l~~~-----v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl~id~-~~--~~i~lS 351 (576)
T Consensus 152 k~GeIVtG~V~Rve~~~viv~l~~~lG~~~~EAiLP~~Eq-------IP~E~yr~Gdrira~i~~V~~~~~kGpqIiLS 223 (457)
T PRK12329 152 LEDPVLTARVLRFERQSVIMAVSSGFGRPEVEAELPKREQ-------LPNDNYRANATFKVFLKEVSEGPRRGPQLFVS 223 (457)
T ss_pred HCCCEEEEEEEEEECCCEEEEECCCCCCCCEEEEECHHHC-------CCCCCCCCCCEEEEEEEEEECCCCCCCEEEEE
T ss_conf 5596799999998169779996477776423697278886-------99987899998999999976467888569995