HHsearch alignment for GI: 254780456 and conserved domain: PRK13806

>PRK13806 rpsA 30S ribosomal protein S1; Provisional.
Probab=100.00  E-value=0  Score=576.41  Aligned_cols=442  Identities=24%  Similarity=0.404  Sum_probs=389.9

Q ss_pred             HHCCCEEEEEEEEEECCCEEEEECC-CHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf             5289769999999967955999744-020000011234543334555553023111335432331122121112222212
Q gi|254780456|r  108 FRAGERIEGVIFNQVKGGMTVDLNG-EVAFLPRSQIDIRPVRDVTPLMHEPQLFEILKMDKRRGNIVVSRRAVLEESRAE  186 (576)
Q Consensus       108 ~~~g~~v~g~V~~~~k~G~~V~i~g-i~~FlP~s~~~~~~~~d~~~~vG~~i~~~Ii~~d~~~~~ivvS~k~~l~~~~~~  186 (576)
T Consensus        31 i~~G~iV~G~Vv~I~~d~v~VDiG~KsEG~Ip~~E~~d~~-~~~~~kvGD~Iev~V~~~~--dgei~LSr~~~~----~~  103 (489)
T PRK13806         31 VRVGDRIKAAIVAIGEDSVFVATGSKVDGVIDRRELEDAE-GNLPYAVGDRLDLYVVAVN--GGEIRLSKAMGG----QG  103 (489)
T ss_pred             CCCCCEEEEEEEEEECCEEEEEECCCEEEEEEHHHHCCCC-CCCCCCCCCEEEEEEEEEC--CCCEEEEHHHHH----HH
T ss_conf             7799889999999979989999689828995899925755-7756589989999999964--981899889988----87


Q ss_pred             CCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCCEEEEEEC
Q ss_conf             11100011222330246788753147177744831578864202444443311332697258999987476527998521
Q gi|254780456|r  187 QRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMK  266 (576)
Q Consensus       187 ~~~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~lslK  266 (576)
T Consensus       104 ~~~~l~ea~e~~~~V~g~I~~~vKGG~~V~i~Gv~aFlP~Sqid~r~v~d~~~~--vGk~~~~~Iikid~~~~nIVvSRR  181 (489)
T PRK13806        104 GAAVLEEARDNGVPVEGKVTGTCKGGFNVEVLRRRAFCPVSQIDLHQVEDPESF--VGQTFQFLITRVEQNGRNIVVSRR  181 (489)
T ss_pred             HHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCEEEEEEHHHCCCCCCCCHHHH--CCCEEEEEEEEECCCCCEEEEEHH
T ss_conf             899999997589869999999986759999899776423166046666785896--796589999997056870786689


Q ss_pred             CCCCC----CCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEEEEE
Q ss_conf             55543----21000000048966589999815966999851420000001111011135574210037845799999862
Q gi|254780456|r  267 QLEKN----PWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVN  342 (576)
Q Consensus       267 ~l~~d----p~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl~id  342 (576)
T Consensus       182 ~lLe~e~~~~~~~~~~~l~~G~vv~G~V~~i~~~GaFVdl~~GvdGllHiSeiSw~r-v~~p~~~~~vGd~v~vkVl~id  260 (489)
T PRK13806        182 ALLEREQAESLATFLEGVKEGDVLEGTVTRLAPFGAFVEIAPGVEGMVHISELSWSR-VQQADEAVSVGDRVRVKVLGIG  260 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEECEEEEEECCCEEEEEECCCCEEEEEHHHCCCCC-CCCHHHEECCCCEEEEEEEEEE
T ss_conf             988888777899999861148800429999757538999379807999835558656-6888894516988999999986


Q ss_pred             CCCC----EEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCCCCHHHHHHHCCC
Q ss_conf             1550----478752034543210000012222213699999850169997068841354005530012200123421112
Q gi|254780456|r  343 PARK----RISLGLKQALINPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEYAKG  418 (576)
Q Consensus       343 ~~~~----~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~~~~~~~~~~k~G  418 (576)
T Consensus       261 ~e~~~~~~risLs~Kql~~dPW~~~~~k~~vG~~v~g~V~~i~~fGaFVel~~gieGlvHiSelSw~~~~~~p~~~~~~G  340 (489)
T PRK13806        261 EAPKGKGLRISLSAKQAGGDPWETVGDRLEADQVVEGKVVRLAPFGAFVEVLPGVEGLVHISEMSWTRRVNKPEEVVAPG  340 (489)
T ss_pred             CCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCEEEEECCCEEEEEEEHHCCCCCCCCCHHHHCCCC
T ss_conf             44566650698601667889578778636799837999997245406999638807999804425534578989960668


Q ss_pred             CCCEEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHH
Q ss_conf             34226885215654553201132210111000011004789879999999708908999617798499999747182121
Q gi|254780456|r  419 DIVKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRV  498 (576)
Q Consensus       419 ~~i~~~Vl~id~~~~~i~LS~K~l~~~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~  498 (576)
T Consensus       341 d~v~vkIl~iD~e~rrisLs~Kq~~~nPw~~~~--~~~~~G~~v~g~V~~i~~fG~fV~l~--~gi~Glih~sdls~~~~  416 (489)
T PRK13806        341 DTVSVKIKELDPAKRRISLSLRDAEGDPWATAA--ERFAPGTTVTGTVEKRAQFGLFVNIA--PGVTGLLPESIIKSSPQ  416 (489)
T ss_pred             CEEEEEEEEECCCCCEEEEEHHHCCCCCHHHHH--HHCCCCCEEEEEEEEEECCEEEEECC--CCCEEEEEHHHCCCCCC
T ss_conf             729999999714337899656753469588998--76368987999999976348999758--99089999898675644


Q ss_pred             CCCHHHCCCCCEEEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCC-C-----CC-CCHHHHHHHHHHHH
Q ss_conf             0420110689879999999705768699870365577779999984034-4-----57-77999999999874
Q gi|254780456|r  499 DQDPGRFSKGQIVDACVVNVSKKDGKVSLSIKALEIAEEKGAVAQFGSS-D-----SG-ASLGDILGMALKNR  564 (576)
Q Consensus       499 ~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k~~~~~~~~~~~~~~~~~-~-----~~-~tlg~~~~~~lk~~  564 (576)
T Consensus       417 ~~~~~~~k~Gd~V~~~Il~id~~~rrIsLsik~l~~~~~~-~w~~~~~~~~~~~~~~g~g~~~~~l~~a~~~k  488 (489)
T PRK13806        417 SKSLAKLNAGDSVTLTVRDINAATRRITLAPADAAGHDDG-EWKQFAPRKEEPRQAGGLGSLGQALQAAMQKR  488 (489)
T ss_pred             CCHHHHCCCCCEEEEEEEEECCCCCEEEECHHHHCCCCCC-HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             2738628999989999999847778898446663458777-36664310248666787057999999997505