HHsearch alignment for GI: 254780456 and conserved domain: PRK13806
>PRK13806 rpsA 30S ribosomal protein S1; Provisional.
Probab=100.00 E-value=0 Score=576.41 Aligned_cols=442 Identities=24% Similarity=0.404 Sum_probs=389.9
Q ss_pred HHCCCEEEEEEEEEECCCEEEEECC-CHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 5289769999999967955999744-020000011234543334555553023111335432331122121112222212
Q gi|254780456|r 108 FRAGERIEGVIFNQVKGGMTVDLNG-EVAFLPRSQIDIRPVRDVTPLMHEPQLFEILKMDKRRGNIVVSRRAVLEESRAE 186 (576)
Q Consensus 108 ~~~g~~v~g~V~~~~k~G~~V~i~g-i~~FlP~s~~~~~~~~d~~~~vG~~i~~~Ii~~d~~~~~ivvS~k~~l~~~~~~ 186 (576)
T Consensus 31 i~~G~iV~G~Vv~I~~d~v~VDiG~KsEG~Ip~~E~~d~~-~~~~~kvGD~Iev~V~~~~--dgei~LSr~~~~----~~ 103 (489)
T PRK13806 31 VRVGDRIKAAIVAIGEDSVFVATGSKVDGVIDRRELEDAE-GNLPYAVGDRLDLYVVAVN--GGEIRLSKAMGG----QG 103 (489)
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCEEEEEEHHHHCCCC-CCCCCCCCCEEEEEEEEEC--CCCEEEEHHHHH----HH
T ss_conf 7799889999999979989999689828995899925755-7756589989999999964--981899889988----87
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCCEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCCEEEEEEC
Q ss_conf 11100011222330246788753147177744831578864202444443311332697258999987476527998521
Q gi|254780456|r 187 QRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMK 266 (576)
Q Consensus 187 ~~~~~~~~l~~G~~v~g~V~~i~~~g~~V~~~g~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~lslK 266 (576)
T Consensus 104 ~~~~l~ea~e~~~~V~g~I~~~vKGG~~V~i~Gv~aFlP~Sqid~r~v~d~~~~--vGk~~~~~Iikid~~~~nIVvSRR 181 (489)
T PRK13806 104 GAAVLEEARDNGVPVEGKVTGTCKGGFNVEVLRRRAFCPVSQIDLHQVEDPESF--VGQTFQFLITRVEQNGRNIVVSRR 181 (489)
T ss_pred HHHHHHHHHHCCCEEEEEEEEEECCCEEEEECCEEEEEEHHHCCCCCCCCHHHH--CCCEEEEEEEEECCCCCEEEEEHH
T ss_conf 899999997589869999999986759999899776423166046666785896--796589999997056870786689
Q ss_pred CCCCC----CCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEEEEE
Q ss_conf 55543----21000000048966589999815966999851420000001111011135574210037845799999862
Q gi|254780456|r 267 QLEKN----PWDDVQDKYVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVN 342 (576)
Q Consensus 267 ~l~~d----p~~~~~~~~~~G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl~id 342 (576)
T Consensus 182 ~lLe~e~~~~~~~~~~~l~~G~vv~G~V~~i~~~GaFVdl~~GvdGllHiSeiSw~r-v~~p~~~~~vGd~v~vkVl~id 260 (489)
T PRK13806 182 ALLEREQAESLATFLEGVKEGDVLEGTVTRLAPFGAFVEIAPGVEGMVHISELSWSR-VQQADEAVSVGDRVRVKVLGIG 260 (489)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEECEEEEEECCCEEEEEECCCCEEEEEHHHCCCCC-CCCHHHEECCCCEEEEEEEEEE
T ss_conf 988888777899999861148800429999757538999379807999835558656-6888894516988999999986
Q ss_pred CCCC----EEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEHHHHHCCCCCHHHHHHHCCC
Q ss_conf 1550----478752034543210000012222213699999850169997068841354005530012200123421112
Q gi|254780456|r 343 PARK----RISLGLKQALINPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEYAKG 418 (576)
Q Consensus 343 ~~~~----~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~g~~V~l~~~i~g~i~~~dls~~~~~~~~~~~~k~G 418 (576)
T Consensus 261 ~e~~~~~~risLs~Kql~~dPW~~~~~k~~vG~~v~g~V~~i~~fGaFVel~~gieGlvHiSelSw~~~~~~p~~~~~~G 340 (489)
T PRK13806 261 EAPKGKGLRISLSAKQAGGDPWETVGDRLEADQVVEGKVVRLAPFGAFVEVLPGVEGLVHISEMSWTRRVNKPEEVVAPG 340 (489)
T ss_pred CCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCEEEEECCCEEEEEEEHHCCCCCCCCCHHHHCCCC
T ss_conf 44566650698601667889578778636799837999997245406999638807999804425534578989960668
Q ss_pred CCCEEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHH
Q ss_conf 34226885215654553201132210111000011004789879999999708908999617798499999747182121
Q gi|254780456|r 419 DIVKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRV 498 (576)
Q Consensus 419 ~~i~~~Vl~id~~~~~i~LS~K~l~~~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~ 498 (576)
T Consensus 341 d~v~vkIl~iD~e~rrisLs~Kq~~~nPw~~~~--~~~~~G~~v~g~V~~i~~fG~fV~l~--~gi~Glih~sdls~~~~ 416 (489)
T PRK13806 341 DTVSVKIKELDPAKRRISLSLRDAEGDPWATAA--ERFAPGTTVTGTVEKRAQFGLFVNIA--PGVTGLLPESIIKSSPQ 416 (489)
T ss_pred CEEEEEEEEECCCCCEEEEEHHHCCCCCHHHHH--HHCCCCCEEEEEEEEEECCEEEEECC--CCCEEEEEHHHCCCCCC
T ss_conf 729999999714337899656753469588998--76368987999999976348999758--99089999898675644
Q ss_pred CCCHHHCCCCCEEEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCC-C-----CC-CCHHHHHHHHHHHH
Q ss_conf 0420110689879999999705768699870365577779999984034-4-----57-77999999999874
Q gi|254780456|r 499 DQDPGRFSKGQIVDACVVNVSKKDGKVSLSIKALEIAEEKGAVAQFGSS-D-----SG-ASLGDILGMALKNR 564 (576)
Q Consensus 499 ~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k~~~~~~~~~~~~~~~~~-~-----~~-~tlg~~~~~~lk~~ 564 (576)
T Consensus 417 ~~~~~~~k~Gd~V~~~Il~id~~~rrIsLsik~l~~~~~~-~w~~~~~~~~~~~~~~g~g~~~~~l~~a~~~k 488 (489)
T PRK13806 417 SKSLAKLNAGDSVTLTVRDINAATRRITLAPADAAGHDDG-EWKQFAPRKEEPRQAGGLGSLGQALQAAMQKR 488 (489)
T ss_pred CCHHHHCCCCCEEEEEEEEECCCCCEEEECHHHHCCCCCC-HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 2738628999989999999847778898446663458777-36664310248666787057999999997505