HHsearch alignment for GI: 254780456 and conserved domain: TIGR00008
>TIGR00008 infA translation initiation factor IF-1; InterPro: IPR004368 This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (IPR003029 from INTERPRO).; GO: 0003743 translation initiation factor activity, 0006413 translational initiation.
Probab=90.72 E-value=0.78 Score=22.34 Aligned_cols=59 Identities=37% Similarity=0.429 Sum_probs=29.4
Q ss_pred EEEEEEEECCCEEE-EEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEEEEECCCCEEE
Q ss_conf 58999981596699-98514200000011110111355742100378457999998621550478
Q gi|254780456|r 286 VSGVVTNLTDYGVF-VELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKRIS 349 (576)
Q Consensus 286 v~g~V~~v~~~G~~-V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl~id~~~~~i~ 349 (576)
T Consensus 7 ~~G~v~e~l~n~~f~V~LeN~~~v~a~iS----Gk~r~~~iri-LpGD~V~ve~SpYdl~~GRI~ 66 (69)
T TIGR00008 7 VEGKVVESLPNAMFRVELENGHEVLAHIS----GKIRKNYIRI-LPGDKVKVELSPYDLTRGRII 66 (69)
T ss_pred ECCEEEECCCCCEEEEEECCCCEEEEEEC----CEEECCEEEE-CCCCEEEEEECCCCCCCCCEE
T ss_conf 42389854369826999479978989971----0341351755-479878998713648775087