HHsearch alignment for GI: 254780456 and conserved domain: cd04471
>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA.
Probab=99.13 E-value=3.2e-10 Score=79.22 Aligned_cols=33 Identities=42% Similarity=0.930 Sum_probs=13.4
Q ss_pred CCEEEEEEEEECCCEEEEEECC-CCEEEEECCCC
Q ss_conf 9665899998159669998514-20000001111
Q gi|254780456|r 283 GSKVSGVVTNLTDYGVFVELQS-GIEGLAHISQI 315 (576)
Q Consensus 283 G~~v~g~V~~v~~~G~~V~l~~-~v~G~i~~sel 315 (576)
T Consensus 2 G~~f~g~I~~v~~~GiFV~l~~~~ieGli~~~~l 35 (83)
T cd04471 2 GEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTL 35 (83)
T ss_pred CCEEEEEEEEEEEEEEEEEEECCCEEEEEECCCC
T ss_conf 9999999998983069999828873999982214