HHsearch alignment for GI: 254780456 and conserved domain: cd05685

>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=99.66  E-value=1.7e-16  Score=117.30  Aligned_cols=68  Identities=25%  Similarity=0.326  Sum_probs=34.8

Q ss_pred             CCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEE
Q ss_conf             9879999999708908999617798499999747182121042011068987999999970576869987
Q gi|254780456|r  459 NDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLS  528 (576)
Q Consensus       459 G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS  528 (576)
T Consensus         1 G~iv~G~V~~i~~fG~FV~l~--~~~~GLvhisels~~~~~~~~~~~~vGd~v~~kVi~id~e~~ri~LS   68 (68)
T cd05685           1 GMVLEGVVTNVTDFGAFVDIG--VKQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRISLS   68 (68)
T ss_pred             CCEEEEEEEEEECEEEEEEEC--CCCEEEEECHHHCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEEECC
T ss_conf             999999999996528999914--99789998189767876798685799999999999998999988779