HHsearch alignment for GI: 254780456 and conserved domain: cd05685
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=99.66 E-value=1.7e-16 Score=117.30 Aligned_cols=68 Identities=25% Similarity=0.326 Sum_probs=34.8
Q ss_pred CCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEE
Q ss_conf 9879999999708908999617798499999747182121042011068987999999970576869987
Q gi|254780456|r 459 NDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLS 528 (576)
Q Consensus 459 G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS 528 (576)
T Consensus 1 G~iv~G~V~~i~~fG~FV~l~--~~~~GLvhisels~~~~~~~~~~~~vGd~v~~kVi~id~e~~ri~LS 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIG--VKQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRISLS 68 (68)
T ss_pred CCEEEEEEEEEECEEEEEEEC--CCCEEEEECHHHCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEEECC
T ss_conf 999999999996528999914--99789998189767876798685799999999999998999988779