HHsearch alignment for GI: 254780456 and conserved domain: cd05686
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=99.62 E-value=1.1e-15 Score=112.39 Aligned_cols=69 Identities=32% Similarity=0.618 Sum_probs=44.0
Q ss_pred CCCCEEEEEEEEEECCCCEEEECC--CEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCCEEEEEE
Q ss_conf 223302467887531471777448--3157886420244444331133269725899998747652799852
Q gi|254780456|r 196 EEGQVIEGTVKNITDYGVFVDLSG--VDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRISLGM 265 (576)
Q Consensus 196 ~~G~~v~g~V~~i~~~g~~V~~~g--~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~lsl 265 (576)
T Consensus 2 evg~i~~G~V~~i~~fGAFV~i~g~~~~GLvHiSeis~~rv~~~~dvv~vGd~V~Vkvi~id-~~~ki~LSl 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGRE-MKDKMKLSL 72 (73)
T ss_pred CCCCEEEEEEEEEEECCEEEEECCCCCCEEEEEECCCCCCCCCHHHHCCCCCEEEEEEEEEC-CCCCEEEEC
T ss_conf 78869999998997532399908988435599560541202899995579999999999886-899889841