HHsearch alignment for GI: 254780456 and conserved domain: cd05686

>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=99.62  E-value=1.1e-15  Score=112.39  Aligned_cols=69  Identities=32%  Similarity=0.618  Sum_probs=44.0

Q ss_pred             CCCCEEEEEEEEEECCCCEEEECC--CEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCCEEEEEE
Q ss_conf             223302467887531471777448--3157886420244444331133269725899998747652799852
Q gi|254780456|r  196 EEGQVIEGTVKNITDYGVFVDLSG--VDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRISLGM  265 (576)
Q Consensus       196 ~~G~~v~g~V~~i~~~g~~V~~~g--~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~lsl  265 (576)
T Consensus         2 evg~i~~G~V~~i~~fGAFV~i~g~~~~GLvHiSeis~~rv~~~~dvv~vGd~V~Vkvi~id-~~~ki~LSl   72 (73)
T cd05686           2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGRE-MKDKMKLSL   72 (73)
T ss_pred             CCCCEEEEEEEEEEECCEEEEECCCCCCEEEEEECCCCCCCCCHHHHCCCCCEEEEEEEEEC-CCCCEEEEC
T ss_conf             78869999998997532399908988435599560541202899995579999999999886-899889841