HHsearch alignment for GI: 254780456 and conserved domain: cd05689

>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.65  E-value=2.8e-16  Score=115.98  Aligned_cols=68  Identities=50%  Similarity=0.966  Sum_probs=30.8

Q ss_pred             CCCCEEEEEEEEEECCCCEEEEC-CCEEEEEEEECCCC-CCCCCCEEECCCCEEEEEEEEECCCCCEEEE
Q ss_conf             22330246788753147177744-83157886420244-4443311332697258999987476527998
Q gi|254780456|r  196 EEGQVIEGTVKNITDYGVFVDLS-GVDGLLHVTDIAWH-RILHPSKVLSIGQQVKVKIIRINQETHRISL  263 (576)
Q Consensus       196 ~~G~~v~g~V~~i~~~g~~V~~~-g~~g~i~~~~ls~~-~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~l  263 (576)
T Consensus         2 ~~G~~v~G~V~~It~fG~FV~i~~g~eGLvHiSelsw~~~~~~p~~~~~~Gd~v~vkIl~iD~e~~rIsL   71 (72)
T cd05689           2 PEGTRLFGKVTNLTDYGCFVELEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERRRISL   71 (72)
T ss_pred             CCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCCCCCCCHHHHCCCCCEEEEEEEEEECCCCEECC
T ss_conf             8899999999899476239996699389999766316546679636038999999999999599799538