HHsearch alignment for GI: 254780456 and conserved domain: cd05690

>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.62  E-value=8.8e-16  Score=112.90  Aligned_cols=66  Identities=48%  Similarity=0.992  Sum_probs=36.8

Q ss_pred             CCEEEEEEEEEECCCCEEEEC-CCEEEEEEEECCCC-CCCCCCEEECCCCEEEEEEEEECCCCCEEEE
Q ss_conf             330246788753147177744-83157886420244-4443311332697258999987476527998
Q gi|254780456|r  198 GQVIEGTVKNITDYGVFVDLS-GVDGLLHVTDIAWH-RILHPSKVLSIGQQVKVKIIRINQETHRISL  263 (576)
Q Consensus       198 G~~v~g~V~~i~~~g~~V~~~-g~~g~i~~~~ls~~-~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~l  263 (576)
T Consensus         1 G~~v~G~V~~i~~fG~FV~l~~gieGLvHiselsw~~~~~~~~~~~~~Gd~V~vkVl~iD~e~~risL   68 (69)
T cd05690           1 GTVVSGKIKSITDFGIFVGLDGGIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNIDVERERISL   68 (69)
T ss_pred             CCEEEEEEEEECCCEEEEEECCCCEEEEEHHHHCCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEECC
T ss_conf             99999999999131899997699659999488245666679768258999999999999798688638