HHsearch alignment for GI: 254780456 and conserved domain: cd05696
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.85 E-value=9e-09 Score=70.43 Aligned_cols=64 Identities=27% Similarity=0.393 Sum_probs=30.4
Q ss_pred EEEEEECC-CEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEEEEECCCCEEEEEE
Q ss_conf 99998159-669998514200000011110111355742100378457999998621550478752
Q gi|254780456|r 288 GVVTNLTD-YGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKRISLGL 352 (576)
Q Consensus 288 g~V~~v~~-~G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl~id~~~~~i~lS~ 352 (576)
T Consensus 7 ~~V~~v~~~~G~~~~l~~g~~gfvhiS~ls-D~kv~~~~~~fk~Gs~H~~RVig~s~~D~l~~lSL 71 (71)
T cd05696 7 VKVTKVEPDLGAVFELKDGLLGFVHISHLS-DDKVPSDTGPFKAGTTHKARIIGYSPMDGLLQLSL 71 (71)
T ss_pred EEEEEECCCCCEEEEECCCCEEEEEEHHCC-CCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECC
T ss_conf 059998588537999699968999960126-66423665786479988899983474341488419