HHsearch alignment for GI: 254780456 and conserved domain: cd05697
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.69 E-value=4.9e-17 Score=120.51 Aligned_cols=69 Identities=35% Similarity=0.562 Sum_probs=33.3
Q ss_pred CCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEECCCCEEEEEEEEEECCCCEEEEEE
Q ss_conf 9665899998159669998514200000011110111355742100378457999998621550478752
Q gi|254780456|r 283 GSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKRISLGL 352 (576)
Q Consensus 283 G~~v~g~V~~v~~~G~~V~l~~~v~G~i~~sels~~~~~~~~~~~~~~G~~v~~~Vl~id~~~~~i~lS~ 352 (576)
T Consensus 1 G~iv~G~V~~i~~fG~fV~l~~~i~Glv~~s~lsd-~~v~~p~~~fk~G~~Vk~rVl~vD~~~~ri~LSl 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLSDHIKGLVPPMHLAD-VRLKHPEKKFKPGLKVKCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEECCCEEEEEECCCEEEEEEHHHHCC-CCCCCHHHCCCCCCEEEEEEEEEECCCCEEEEEC
T ss_conf 99999999997384279995799069987899086-5206988908999999999999948879988659