HHsearch alignment for GI: 254780456 and conserved domain: cd05699

>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=97.36  E-value=0.0004  Score=42.26  Aligned_cols=69  Identities=19%  Similarity=0.347  Sum_probs=32.7

Q ss_pred             CCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCC--HHHCCCCCEEEEEEEEECCCCCEEEEEE
Q ss_conf             9879999999708908999617798499999747182121042--0110689879999999705768699870
Q gi|254780456|r  459 NDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQD--PGRFSKGQIVDACVVNVSKKDGKVSLSI  529 (576)
Q Consensus       459 G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~--~~~~~vG~~v~~~Vi~id~~~~ri~LS~  529 (576)
T Consensus         1 Gq~VdvkVlkkt~~GLeV~ilp-~~~~afLPt~HLSDhv~N~~LL~~~lq~GD~i-~~vmCls~~~~~iil~r   71 (72)
T cd05699           1 GKLVDARVLKKTLNGLEVAILP-EEIRAFLPTMHLSDHVSNCPLLWHCLQEGDTI-PNLMCLSNYKGRIILTK   71 (72)
T ss_pred             CCEEEEEEEEECCCCCEEEECC-CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCH-HCEEEEECCCCCEEEEC
T ss_conf             9606889998628872789768-88542144532233322458999988447861-02578862788288845