HHsearch alignment for GI: 254780456 and conserved domain: cd05699
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=97.36 E-value=0.0004 Score=42.26 Aligned_cols=69 Identities=19% Similarity=0.347 Sum_probs=32.7
Q ss_pred CCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCC--HHHCCCCCEEEEEEEEECCCCCEEEEEE
Q ss_conf 9879999999708908999617798499999747182121042--0110689879999999705768699870
Q gi|254780456|r 459 NDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQD--PGRFSKGQIVDACVVNVSKKDGKVSLSI 529 (576)
Q Consensus 459 G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~--~~~~~vG~~v~~~Vi~id~~~~ri~LS~ 529 (576)
T Consensus 1 Gq~VdvkVlkkt~~GLeV~ilp-~~~~afLPt~HLSDhv~N~~LL~~~lq~GD~i-~~vmCls~~~~~iil~r 71 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAILP-EEIRAFLPTMHLSDHVSNCPLLWHCLQEGDTI-PNLMCLSNYKGRIILTK 71 (72)
T ss_pred CCEEEEEEEEECCCCCEEEECC-CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCH-HCEEEEECCCCCEEEEC
T ss_conf 9606889998628872789768-88542144532233322458999988447861-02578862788288845