HHsearch alignment for GI: 254780456 and conserved domain: cd05699
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=97.21 E-value=0.00045 Score=41.98 Aligned_cols=69 Identities=22% Similarity=0.241 Sum_probs=39.7
Q ss_pred CCCEEEEEEEEEEEEEEEEE-CCCCEEEEEHHHHHCCCCCHHHH-HHHCCCCCCEEEEEECCCCCCCCCCCH
Q ss_conf 22136999998501699970-68841354005530012200123-421112342268852156545532011
Q gi|254780456|r 370 GTEVEGEVKNKTDFGLFIGL-DEHLDGMIHLSDLDWNRPGEKVI-AEYAKGDIVKAVVLDIDVGKERISLGV 439 (576)
Q Consensus 370 G~~v~g~V~~v~~~g~~V~l-~~~i~g~i~~~dls~~~~~~~~~-~~~k~G~~i~~~Vl~id~~~~~i~LS~ 439 (576)
T Consensus 1 Gq~VdvkVlkkt~~GLeV~ilp~~~~afLPt~HLSDhv~N~~LL~~~lq~GD~i~-~vmCls~~~~~iil~r 71 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAILPEEIRAFLPTMHLSDHVSNCPLLWHCLQEGDTIP-NLMCLSNYKGRIILTK 71 (72)
T ss_pred CCEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHH-CEEEEECCCCCEEEEC
T ss_conf 9606889998628872789768885421445322333224589999884478610-2578862788288845