HHsearch alignment for GI: 254780456 and conserved domain: cd05702

>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.10  E-value=1.6e-10  Score=81.04  Aligned_cols=58  Identities=24%  Similarity=0.321  Sum_probs=24.1

Q ss_pred             CCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHH--HHCCCHHHCCCCCEEEEEEEEE
Q ss_conf             98799999997089089996177984999997471821--2104201106898799999997
Q gi|254780456|r  459 NDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRD--RVDQDPGRFSKGQIVDACVVNV  518 (576)
Q Consensus       459 G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~--~~~~~~~~~~vG~~v~~~Vi~i  518 (576)
T Consensus         1 G~vv~g~V~sik~~~l~V~L~--d~~~GrVhiSei~D~~~~~k~P~~~~k~Gq~V~~rViG~   60 (70)
T cd05702           1 GDLVKAKVKSVKPTQLNVQLA--DNVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGG   60 (70)
T ss_pred             CCEEEEEEEEEECCEEEEEEC--CCCEEEEEHHHCCCCCCCCCCHHHHCCCCCEEEEEEEEE
T ss_conf             977999999994670899968--995778984552135555569468568999999999976