HHsearch alignment for GI: 254780456 and conserved domain: cd05703

>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.11  E-value=2.7e-10  Score=79.64  Aligned_cols=70  Identities=27%  Similarity=0.291  Sum_probs=32.2

Q ss_pred             CCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHH--HCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEH
Q ss_conf             987999999970890899961779849999974718212--104201106898799999997057686998703
Q gi|254780456|r  459 NDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDR--VDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIK  530 (576)
Q Consensus       459 G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~--~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k  530 (576)
T Consensus         1 G~~v~gfV~n~~~~~~wv~iS--p~V~gri~~l~lSdd~s~l~~~e~~FpvG~avk~~V~~vD~e~~~l~LS~r   72 (73)
T cd05703           1 GQEVTGFVNNVSKEFVWLTIS--PDVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLSAR   72 (73)
T ss_pred             CCEEEEEEEECCCCEEEEEEC--CCEEEEEEHHHHCCCHHHHCCHHHHCCCCCEEEEEEEEECCCCCEEEEEEC
T ss_conf             987999999725984999988--881899970542688568538887299984599999998287788999803