HHsearch alignment for GI: 254780456 and conserved domain: cd05705

>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.32  E-value=1e-11  Score=88.34  Aligned_cols=71  Identities=20%  Similarity=0.287  Sum_probs=56.1

Q ss_pred             CCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCH---HHCCCCCEEEEEEEEECCCCCEEEEE
Q ss_conf             47898799999997089089996177984999997471821210420---11068987999999970576869987
Q gi|254780456|r  456 LRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDP---GRFSKGQIVDACVVNVSKKDGKVSLS  528 (576)
Q Consensus       456 ~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~---~~~~vG~~v~~~Vi~id~~~~ri~LS  528 (576)
T Consensus         1 ikeGq~vRGyVk~v~~~GvFv~Ls--~~v~grv~~~nls~~~v~dp~~~~~~fp~GkLv~~kVlsvd~~~~~VELS   74 (74)
T cd05705           1 IKEGQLLRGYVSSVTKQGVFFRLS--SSIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLVELS   74 (74)
T ss_pred             CCCCCEEEEEEEECCCCCEEEEEC--CCEEEEEEEECCCHHHHCCHHHHHCCCCCCCEEEEEEEEECCCCCEEECC
T ss_conf             998879899999826873999956--87489999700362120682688614899989999999986776848609