HHsearch alignment for GI: 254780456 and conserved domain: pfam00575
>pfam00575 S1 S1 RNA binding domain. The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.
Probab=99.63 E-value=2.9e-15 Score=109.74 Aligned_cols=73 Identities=36% Similarity=0.536 Sum_probs=49.0
Q ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEH
Q ss_conf 478987999999970890899961779849999974718212104201106898799999997057686998703
Q gi|254780456|r 456 LRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIK 530 (576)
Q Consensus 456 ~~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k 530 (576)
T Consensus 2 ~~~G~iv~G~V~~i~~~G~fV~l~--~~~~g~v~~s~ls~~~~~~~~~~~~~G~~v~~~V~~vd~~~~~i~lS~k 74 (74)
T pfam00575 2 PEEGDVVKGTVTRVTKGGAFVDLG--NGVEGFIPISEISDDRVEDPDEVLKVGDEVEVKVLKVDKERGRIILSIR 74 (74)
T ss_pred CCCCCEEEEEEEEEECCEEEEEEC--CCCEEEEEHHHCCCCCCCCHHHHHCCCCEEEEEEEEEECCCCEEEEEEC
T ss_conf 889999999999998775999978--9979999844613655567768305999999999999999999999839