HHsearch alignment for GI: 254780456 and conserved domain: pfam00575
>pfam00575 S1 S1 RNA binding domain. The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.
Probab=99.61 E-value=2.2e-15 Score=110.52 Aligned_cols=71 Identities=41% Similarity=0.816 Sum_probs=34.5
Q ss_pred CCCCEEEEEEEEEECCCCEEEEC-CCEEEEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCCCCEEEEEEC
Q ss_conf 22330246788753147177744-831578864202444443311332697258999987476527998521
Q gi|254780456|r 196 EEGQVIEGTVKNITDYGVFVDLS-GVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMK 266 (576)
Q Consensus 196 ~~G~~v~g~V~~i~~~g~~V~~~-g~~g~i~~~~ls~~~~~~~~~~~~~G~~v~~~Vl~~d~~~~~i~lslK 266 (576)
T Consensus 3 ~~G~iv~G~V~~i~~~G~fV~l~~~~~g~v~~s~ls~~~~~~~~~~~~~G~~v~~~V~~vd~~~~~i~lS~k 74 (74)
T pfam00575 3 EEGDVVKGTVTRVTKGGAFVDLGNGVEGFIPISEISDDRVEDPDEVLKVGDEVEVKVLKVDKERGRIILSIR 74 (74)
T ss_pred CCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCCCCCCCHHHHHCCCCEEEEEEEEEECCCCEEEEEEC
T ss_conf 899999999999987759999789979999844613655567768305999999999999999999999839