HHsearch alignment for GI: 254780456 and conserved domain: pfam10246
>pfam10246 MRP-S35 Mitochondrial ribosomal protein MRP-S35. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. that are highly conserved from worms to humans. The structure has previously been referred to as MRP-S18 but the current numbering fits the preferred nomenclature from these authors.
Probab=97.26 E-value=0.0016 Score=38.71 Aligned_cols=73 Identities=23% Similarity=0.272 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHH-CCCCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 10688999988540-214638987799999998199899994796036789975056643556378987999999974
Q gi|254780456|r 6 PSREDFATLLEESF-TKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFMGKGQYTPIKVGDEVEVYVERTE 82 (576)
Q Consensus 6 ~~~~~f~~ll~~~~-~~~~~~~G~iv~G~V~~i~~~~v~vdig~k~~G~i~~~e~~~~~~~~~~kvGd~i~v~V~~~~ 82 (576)
T Consensus 2 ~~~~sFasLLR~S~fi~lG~~~gk~v~G~I~hvv~dDLYIDfG~KFhcVc~rP----~~~~~~y~~G~rV~lrLkdlE 75 (105)
T pfam10246 2 HPEKSFASLLRNSKFVQLGDAEGKLVIGKIFHIVEDDLYIDFGGKFHCVCKRP----AVNGEKYQRGSRVRLRLKDLE 75 (105)
T ss_pred CCHHHHHHHHHCCCHHHCCCCCCCEEEEEEEEEECCCEEEEECCEEEEEECCC----CCCHHHCCCCCEEEEEECCHH
T ss_conf 75221999973591210578557788999999706725998377167887376----647100577888999966875