HHsearch alignment for GI: 254780456 and conserved domain: smart00316
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=99.34 E-value=1.1e-11 Score=88.15 Aligned_cols=72 Identities=31% Similarity=0.415 Sum_probs=50.5
Q ss_pred CCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEH
Q ss_conf 78987999999970890899961779849999974718212104201106898799999997057686998703
Q gi|254780456|r 457 RKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIK 530 (576)
Q Consensus 457 ~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k 530 (576)
T Consensus 1 ~~G~iv~g~V~~v~~~g~~v~i~--~~~~g~l~~~~l~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~k 72 (72)
T smart00316 1 EVGDVVEGTVTEITPFGAFVDLG--NGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCCEEEEEEEEEECCEEEEEEC--CCCEEEEEHHHCCCCCCCCHHHEECCCCEEEEEEEEEECCCCEEEEEEC
T ss_conf 99989999999997873999976--9989999807505555478468363898999999999999999999859