HHsearch alignment for GI: 254780456 and conserved domain: smart00316

>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=99.34  E-value=1.1e-11  Score=88.15  Aligned_cols=72  Identities=31%  Similarity=0.415  Sum_probs=50.5

Q ss_pred             CCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCHHHHCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEH
Q ss_conf             78987999999970890899961779849999974718212104201106898799999997057686998703
Q gi|254780456|r  457 RKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIK  530 (576)
Q Consensus       457 ~~G~iv~g~V~~v~~~G~~V~l~~~~gv~G~i~~s~is~~~~~~~~~~~~vG~~v~~~Vi~id~~~~ri~LS~k  530 (576)
T Consensus         1 ~~G~iv~g~V~~v~~~g~~v~i~--~~~~g~l~~~~l~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~k   72 (72)
T smart00316        1 EVGDVVEGTVTEITPFGAFVDLG--NGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK   72 (72)
T ss_pred             CCCCEEEEEEEEEECCEEEEEEC--CCCEEEEEHHHCCCCCCCCHHHEECCCCEEEEEEEEEECCCCEEEEEEC
T ss_conf             99989999999997873999976--9989999807505555478468363898999999999999999999859