RPSBLAST alignment for GI: 254780456 and conserved domain: TIGR00717

>gnl|CDD|162009 TIGR00717, rpsA, ribosomal protein S1. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned. Length = 516

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 26/260 (10%)

Query: 282 EGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEV 341
            GS V G V  +    VFV++    EG     +       +     + VG +VEV +  V
Sbjct: 18  PGSIVKGTVVAINKDTVFVDVGLKSEGRIPKEEF------LDAPLEIQVGDEVEVYLDRV 71

Query: 342 NPARKRISLGLKQAL-INPWEEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGM---- 396
                   L  ++A     W +  K++  G+ VEG++  K   G  +     L+G+    
Sbjct: 72  EDRFGETVLSREKAQRHELWIKLEKAYEEGSIVEGKIVGKVKGGFIV----DLNGVEAFL 127

Query: 397 -IHLSDLDWNRPGEKVIAEYAKGDIVKAVVLDIDVGKERISLGVKQL--SGSAPDVVDSV 453
                D+   +  + +I     G  +K  ++ +D  +  I +  +       +    + +
Sbjct: 128 PGSQVDVKPIKDLDSLI-----GKTLKFKIIKLDQKRNNIVVSRRAYLEEERSQAREELL 182

Query: 454 SSLRKNDVVSCEVISVSEGGIEVSLIDHKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDA 513
            +L++ DVV   V ++++ G     +D  G++  +  +D+S  RV         GQ V  
Sbjct: 183 ENLKEGDVVKGVVKNITDFGA---FVDLGGVDGLLHITDMSWKRVKHPSEYVKVGQEVKV 239

Query: 514 CVVNVSKKDGKVSLSIKALE 533
            V+   K+ G++SLS+K L 
Sbjct: 240 KVIKFDKEKGRISLSLKQLG 259