RPSBLAST alignment for GI: 254780456 and conserved domain: cd04471
>gnl|CDD|88436 cd04471, S1_RNase_R, S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA.. Length = 83
Score = 46.9 bits (112), Expect = 1e-05
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 198 GQVIEGTVKNITDYGVFVDLS--GVDGLLHVTDI---------AWHRIL--HPSKVLSIG 244
G+ +G + +T +G+FV+L V+GL+HV+ + H ++ KV +G
Sbjct: 2 GEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLG 61
Query: 245 QQVKVKIIRINQETHRISLGM 265
+VKV+++R++ + +I +
Sbjct: 62 DKVKVRVVRVDLDRRKIDFEL 82