RPSBLAST alignment for GI: 254780456 and conserved domain: cd04471
>gnl|CDD|88436 cd04471, S1_RNase_R, S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA.. Length = 83
Score = 45.8 bits (109), Expect = 3e-05
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 283 GSKVSGVVTNLTDYGVFVELQS-GIEGLAHISQI----------SWTKKNIHPSKILSVG 331
G + GV++ +T +G+FVEL + +EGL H+S + + K+ +G
Sbjct: 2 GEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLG 61
Query: 332 QQVEVVILEVNPARKRISLGL 352
+V+V ++ V+ R++I L
Sbjct: 62 DKVKVRVVRVDLDRRKIDFEL 82