RPSBLAST alignment for GI: 254780456 and conserved domain: cd05685

>gnl|CDD|88440 cd05685, S1_Tex, S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.. Length = 68
 Score = 69.0 bits (169), Expect = 3e-12
 Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 1/67 (1%)

Query: 198 GQVIEGTVKNITDYGVFVDLS-GVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKIIRINQ 256
           G V+EG V N+TD+G FVD+    DGL+H++ +A   + HPS V+S+G  V+VK+I I++
Sbjct: 1   GMVLEGVVTNVTDFGAFVDIGVKQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDE 60

Query: 257 ETHRISL 263
           E  RISL
Sbjct: 61  ERGRISL 67