BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1
[Candidatus Liberibacter asiaticus str. psy62]
(576 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 576
Score = 1155 bits (2989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/576 (100%), Positives = 576/576 (100%)
Query: 1 MSFTNPSREDFATLLEESFTKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFM 60
MSFTNPSREDFATLLEESFTKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFM
Sbjct: 1 MSFTNPSREDFATLLEESFTKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFM 60
Query: 61 GKGQYTPIKVGDEVEVYVERTENSFGEAVFSRDKALREGVWEKIEAKFRAGERIEGVIFN 120
GKGQYTPIKVGDEVEVYVERTENSFGEAVFSRDKALREGVWEKIEAKFRAGERIEGVIFN
Sbjct: 61 GKGQYTPIKVGDEVEVYVERTENSFGEAVFSRDKALREGVWEKIEAKFRAGERIEGVIFN 120
Query: 121 QVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPLMHEPQLFEILKMDKRRGNIVVSRRAVL 180
QVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPLMHEPQLFEILKMDKRRGNIVVSRRAVL
Sbjct: 121 QVKGGMTVDLNGEVAFLPRSQIDIRPVRDVTPLMHEPQLFEILKMDKRRGNIVVSRRAVL 180
Query: 181 EESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKV 240
EESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKV
Sbjct: 181 EESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKV 240
Query: 241 LSIGQQVKVKIIRINQETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFV 300
LSIGQQVKVKIIRINQETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFV
Sbjct: 241 LSIGQQVKVKIIRINQETHRISLGMKQLEKNPWDDVQDKYVEGSKVSGVVTNLTDYGVFV 300
Query: 301 ELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKRISLGLKQALINPW 360
ELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKRISLGLKQALINPW
Sbjct: 301 ELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKRISLGLKQALINPW 360
Query: 361 EEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEYAKGDI 420
EEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEYAKGDI
Sbjct: 361 EEFSKSHPPGTEVEGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEKVIAEYAKGDI 420
Query: 421 VKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLID 480
VKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLID
Sbjct: 421 VKAVVLDIDVGKERISLGVKQLSGSAPDVVDSVSSLRKNDVVSCEVISVSEGGIEVSLID 480
Query: 481 HKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIKALEIAEEKGA 540
HKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIKALEIAEEKGA
Sbjct: 481 HKGINSFIRRSDLSRDRVDQDPGRFSKGQIVDACVVNVSKKDGKVSLSIKALEIAEEKGA 540
Query: 541 VAQFGSSDSGASLGDILGMALKNRGNDAGDSNDNQG 576
VAQFGSSDSGASLGDILGMALKNRGNDAGDSNDNQG
Sbjct: 541 VAQFGSSDSGASLGDILGMALKNRGNDAGDSNDNQG 576
>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 699
Score = 44.7 bits (104), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 172 IVVSRRAVLEESRAEQRSEIVQKLEEGQVIEGTVKNITDYGVFVDLSGV-DGLLHVTDIA 230
I S A +E +R RS I E ++ +G V + D+G FV G DGL+H++ ++
Sbjct: 595 IASSSLAEIEAAREMIRS-ITDVPEVNKIYKGQVVKVMDFGAFVHFCGARDGLVHISQLS 653
Query: 231 WHRILHPSKVLSIGQQVKVKIIRINQETHRISLGMKQLEKN 271
R+ S V+ G V VK++ + + +I L MK +++N
Sbjct: 654 TERVAKTSDVVKEGDTVWVKLLDFD-DRGKIKLSMKVVDQN 693
Score = 35.0 bits (79), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 288 GVVTNLTDYGVFVELQSGIEGLAHISQISWTKKNIHPSKILSVGQQVEVVILEVNPARKR 347
G V + D+G FV +GL HISQ+S T++ S ++ G V V +L+ + R +
Sbjct: 625 GQVVKVMDFGAFVHFCGARDGLVHISQLS-TERVAKTSDVVKEGDTVWVKLLDFDD-RGK 682
Query: 348 ISLGLK 353
I L +K
Sbjct: 683 IKLSMK 688
Score = 32.0 bits (71), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 374 EGEVKNKTDFGLFIGLDEHLDGMIHLSDLDWNRPGEK--VIAEYAKGDIVKAVVLDI-DV 430
+G+V DFG F+ DG++H+S L R + V+ E GD V +LD D
Sbjct: 624 KGQVVKVMDFGAFVHFCGARDGLVHISQLSTERVAKTSDVVKE---GDTVWVKLLDFDDR 680
Query: 431 GKERISLGV 439
GK ++S+ V
Sbjct: 681 GKIKLSMKV 689
>gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 526
Score = 29.6 bits (65), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 140 SQIDIRPVRDVTP------LMHEPQLFEILKMDKRRGNIVVSRRAVLEESRAEQRSEIVQ 193
QI ++ RD P ++ +P + MD R + +++ ++++ R +R
Sbjct: 77 CQISLKVARDRDPSIDIGGVVSDP----LPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132
Query: 194 KLEE--GQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKI 251
+ ++ G++I GTVK + V VDL DG++ + L P G +VK I
Sbjct: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP------GDRVKSYI 186
Query: 252 IRINQE 257
+ +E
Sbjct: 187 YDVRRE 192
>gi|254780875|ref|YP_003065288.1| protoporphyrinogen oxidase (methyltransferase) protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 264
Score = 25.4 bits (54), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 280 YVEGSKVSGVVTNLTDYGVFVELQSGIEGLAHISQIS-WTKKNIHPSKILSV----GQQV 334
Y+E V + + D+ + L GI+GL+H I+ ++++ + SV Q+V
Sbjct: 174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKV 233
Query: 335 EVVILEVNPARKRISLGLKQALINPWEEF 363
+VV RI K L+N ++++
Sbjct: 234 DVV---------RIFESRKLFLVNAFKDY 253
>gi|254780885|ref|YP_003065298.1| hypothetical protein CLIBASIA_03910 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 207
Score = 25.4 bits (54), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 450 VDSVSSLRKNDVVSCEVISVSEGGIEVSL 478
VD+ L N SC+VI +SE G+ VS+
Sbjct: 130 VDAQLVLNDNTKHSCKVIDISESGVSVSV 158
>gi|254781039|ref|YP_003065452.1| putative glycerol-3-phosphate dehydrogenase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 329
Score = 24.3 bits (51), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 496 DRVDQDPGRFSKGQIVDACVVNVSKKDG 523
++ + D + +G I +CV+N+SKK G
Sbjct: 268 EKQNPDQIQLVEGAIAVSCVINISKKMG 295
>gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus
Liberibacter asiaticus str. psy62]
Length = 461
Score = 24.3 bits (51), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 114 IEGVIFNQVKGGMTVDLNGEVAF 136
I VIF + G T+ LNGEV F
Sbjct: 116 ILMVIFRHLTGIRTIVLNGEVMF 138
>gi|254780488|ref|YP_003064901.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 423
Score = 23.9 bits (50), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 16 EESFTKKDLAENCVTKGIVVGLEKDTVVVDVGLKFEGRIPRREFMG-KGQYTPIKVGDEV 74
EE T DL ++C T+ I L + ++ G++ +EFM +Y + + DEV
Sbjct: 178 EEQKTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEV 237
Query: 75 EVYVERTENSFG 86
RT F
Sbjct: 238 MTGWGRTGKIFA 249
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.315 0.136 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,722
Number of Sequences: 1233
Number of extensions: 16705
Number of successful extensions: 65
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 12
length of query: 576
length of database: 328,796
effective HSP length: 79
effective length of query: 497
effective length of database: 231,389
effective search space: 115000333
effective search space used: 115000333
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 41 (20.4 bits)