HHsearch alignment for GI: 254780457 and conserved domain: PRK12269
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional.
Probab=100.00 E-value=0 Score=481.17 Aligned_cols=202 Identities=28% Similarity=0.433 Sum_probs=176.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHH--------------------------
Q ss_conf 881898666877896789999999817835620289999985232101110146--------------------------
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDE-------------------------- 60 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~-------------------------- 60 (217)
T Consensus 33 ~~iIIAIDGPAGSGKSTVAk~lA~~LG~~yLDTGAmYRaval~aLr~~~~l~~e~~~~~~d~d~a~~~a~~~~a~~ld~~ 112 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVSELAVQACSPSPDPDAAVGCAAVPHATNLDTS 112 (863)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 98899986898678899999999982995887488999999999764112221124566540123322101211233201
Q ss_pred ---------------HHHHHHH---------HHCCCCCCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf ---------------5533332---------1011124444-44320121001111220578999988788887630388
Q gi|254780457|r 61 ---------------KMAIKIA---------QNIVLSNLDK-AQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLG 115 (217)
Q Consensus 61 ---------------~~~~~~~---------~~i~~~~~~~-~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g 115 (217)
T Consensus 113 ~~~~~~~~~v~L~de~~~~~~~~~~~i~~~~~~v~lngedVt~~IRt~eV~~~AS~VAa~p~VR~aLv~~QR~~a~~-~G 191 (863)
T PRK12269 113 YAPLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENVESLLRSDEVESAVSYFAAMPAIRAIMTGKIRSAVCG-AR 191 (863)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-CC
T ss_conf 25532222200021123322221134222355266077503555543888877777755699999999999988547-99
Q ss_pred EEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC
Q ss_conf 46206412556630388689984488889999866776521113569999999998561023675785379973999778
Q gi|254780457|r 116 VILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTS 195 (217)
Q Consensus 116 ~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs 195 (217)
T Consensus 192 vV~DGRDIGTVVfPdA~lKIFLTAS~e~RA~RR~~Q~~~---k~sleel~~dI~~RD~rDs~R~vAPLk~A~DAvlIDTS 268 (863)
T PRK12269 192 VVCEGRDLTTVVFVDADLKCYLDASIEARVARRWAQGTS---RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTS 268 (863)
T ss_pred EEEECCCCCCEECCCCCEEEEEECCHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC
T ss_conf 688668786556899987599979989999999863114---58999999999987322154765788627862899789
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 98989999999999998
Q gi|254780457|r 196 EMDIGTMCKVAKGLIDT 212 (217)
Q Consensus 196 ~lsi~ev~~~i~~~I~~ 212 (217)
T Consensus 269 ~LTIeEVvEKIl~~~~~ 285 (863)
T PRK12269 269 CLTIEEVCERIAREAHR 285 (863)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 99299999999998755