HHsearch alignment for GI: 254780457 and conserved domain: PRK12269

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional.
Probab=100.00  E-value=0  Score=481.17  Aligned_cols=202  Identities=28%  Similarity=0.433  Sum_probs=176.2

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHH--------------------------
Q ss_conf             881898666877896789999999817835620289999985232101110146--------------------------
Q gi|254780457|r    7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDE--------------------------   60 (217)
Q Consensus         7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~--------------------------   60 (217)
T Consensus        33 ~~iIIAIDGPAGSGKSTVAk~lA~~LG~~yLDTGAmYRaval~aLr~~~~l~~e~~~~~~d~d~a~~~a~~~~a~~ld~~  112 (863)
T PRK12269         33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVSELAVQACSPSPDPDAAVGCAAVPHATNLDTS  112 (863)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf             98899986898678899999999982995887488999999999764112221124566540123322101211233201


Q ss_pred             ---------------HHHHHHH---------HHCCCCCCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             ---------------5533332---------1011124444-44320121001111220578999988788887630388
Q gi|254780457|r   61 ---------------KMAIKIA---------QNIVLSNLDK-AQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLG  115 (217)
Q Consensus        61 ---------------~~~~~~~---------~~i~~~~~~~-~~lr~~~I~~~~S~iA~~p~VR~~l~~~Qr~~~~~~~g  115 (217)
T Consensus       113 ~~~~~~~~~v~L~de~~~~~~~~~~~i~~~~~~v~lngedVt~~IRt~eV~~~AS~VAa~p~VR~aLv~~QR~~a~~-~G  191 (863)
T PRK12269        113 YAPLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENVESLLRSDEVESAVSYFAAMPAIRAIMTGKIRSAVCG-AR  191 (863)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-CC
T ss_conf             25532222200021123322221134222355266077503555543888877777755699999999999988547-99


Q ss_pred             EEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC
Q ss_conf             46206412556630388689984488889999866776521113569999999998561023675785379973999778
Q gi|254780457|r  116 VILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTS  195 (217)
Q Consensus       116 ~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~~~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs  195 (217)
T Consensus       192 vV~DGRDIGTVVfPdA~lKIFLTAS~e~RA~RR~~Q~~~---k~sleel~~dI~~RD~rDs~R~vAPLk~A~DAvlIDTS  268 (863)
T PRK12269        192 VVCEGRDLTTVVFVDADLKCYLDASIEARVARRWAQGTS---RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTS  268 (863)
T ss_pred             EEEECCCCCCEECCCCCEEEEEECCHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC
T ss_conf             688668786556899987599979989999999863114---58999999999987322154765788627862899789


Q ss_pred             CCCHHHHHHHHHHHHHH
Q ss_conf             98989999999999998
Q gi|254780457|r  196 EMDIGTMCKVAKGLIDT  212 (217)
Q Consensus       196 ~lsi~ev~~~i~~~I~~  212 (217)
T Consensus       269 ~LTIeEVvEKIl~~~~~  285 (863)
T PRK12269        269 CLTIEEVCERIAREAHR  285 (863)
T ss_pred             CCCHHHHHHHHHHHHHH
T ss_conf             99299999999998755