HHsearch alignment for GI: 254780457 and conserved domain: PRK13947
>PRK13947 shikimate kinase; Provisional.
Probab=99.21 E-value=1.5e-09 Score=78.04 Aligned_cols=157 Identities=20% Similarity=0.259 Sum_probs=85.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 98666877896789999999817835620289999985232101110146553333210111244444432012100111
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVAS 90 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~S 90 (217)
T Consensus 4 I~LiG~mGsGKTtiGk~La~~L~~~fiD~D~~Ie~------~~g~sI~eIf---~~~GE--------------------- 53 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKKVATTLSFGFIDTDKEIEK------MAGMTVSEIF---EKDGE--------------------- 53 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHHH------HCCCCHHHHH---HHHCH---------------------
T ss_conf 89979999988999999999979698987499998------8299889999---98489---------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH-------CCCEEEECCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHC--CCCH
Q ss_conf 1220578999988788887630-------388462064125566303886899844888899998667765211--1356
Q gi|254780457|r 91 QVASIDSVRDALIDIQRSFAQN-------KLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGE--KVDY 161 (217)
Q Consensus 91 ~iA~~p~VR~~l~~~Qr~~~~~-------~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA~RR~~el~~~g~--~~~~ 161 (217)
T Consensus 54 -----~~FR~~E~~~l~~~~~~~~~VistGGG~v~~~~n~--~~l~~~g~vi~L~~~~~~l~~R-l~~~~~RPll~~~~~ 125 (171)
T PRK13947 54 -----VRFRSLEKAAVRKAARLKNLVIATGGGVVLNPENI--VQLRKNGVLICLVARPEVILRR-IKKKKDRPLLMVGNP 125 (171)
T ss_pred -----HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHH--HHHHHCCEEEEECCCHHHHHHH-HHCCCCCCCCCCCCH
T ss_conf -----99999999999974036897997898500699999--9999689899973999999999-728999997989987
Q ss_pred HHHHHH-HHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 999999-9998561023675785379973999778989899999999999987406
Q gi|254780457|r 162 VKILED-LRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLDN 216 (217)
Q Consensus 162 ~ev~~~-i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I~~kl~n 216 (217)
T Consensus 126 ~~~l~~l~~~R~---------~~Y~~A-d~~I~~~~~s~~ei~~~Ii~~~~k-~kn 170 (171)
T PRK13947 126 EERIRELLKERE---------PFYRFA-DFTIDTSDMTIDEVAEEIIKAYIK-LKN 170 (171)
T ss_pred HHHHHHHHHHHH---------HHHHHC-CEEEECCCCCHHHHHHHHHHHHHH-HCC
T ss_conf 999999999999---------999976-989889989999999999999997-208