HHsearch alignment for GI: 254780457 and conserved domain: TIGR00382

>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=96.68  E-value=0.0012  Score=42.75  Aligned_cols=73  Identities=22%  Similarity=0.295  Sum_probs=44.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHCCCCCCC--CCCCCCHHHHC
Q ss_conf             9866687789678999999981783562028999998523210111014-65533332101112444--44432012100
Q gi|254780457|r   11 IAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDD-EKMAIKIAQNIVLSNLD--KAQLSSNAIAN   87 (217)
Q Consensus        11 IaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~--~~~lr~~~I~~   87 (217)
T Consensus       155 ILLiGPTGSGKTLLAqTLA~~L~VPfAiA----DATt--LTEAGYVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDK  228 (452)
T TIGR00382       155 ILLIGPTGSGKTLLAQTLARILNVPFAIA----DATT--LTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDK  228 (452)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCEEEC----CHHH--HHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCC
T ss_conf             24546888526899999998738874211----1110--20066424228899999987414552452785089842231


Q ss_pred             CC
Q ss_conf             11
Q gi|254780457|r   88 VA   89 (217)
Q Consensus        88 ~~   89 (217)
T Consensus       229 Ia  230 (452)
T TIGR00382       229 IA  230 (452)
T ss_pred             HH
T ss_conf             01