HHsearch alignment for GI: 254780457 and conserved domain: TIGR00635
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.62 E-value=0.0088 Score=37.53 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=25.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCE--EECCHHHHH
Q ss_conf 8666877896789999999817835--620289999
Q gi|254780457|r 12 AIDGTAAAGKGVLSRFIALEYGFHY--LDTGLIYRA 45 (217)
Q Consensus 12 aIDGpagsGKsT~ak~lA~~l~~~~--ldtG~~YR~ 45 (217)
T Consensus 34 LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~kP 69 (305)
T TIGR00635 34 LLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP 69 (305)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCH
T ss_conf 631756874678999999983893267406755475