HHsearch alignment for GI: 254780457 and conserved domain: TIGR00635

>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.62  E-value=0.0088  Score=37.53  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=25.7

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCE--EECCHHHHH
Q ss_conf             8666877896789999999817835--620289999
Q gi|254780457|r   12 AIDGTAAAGKGVLSRFIALEYGFHY--LDTGLIYRA   45 (217)
Q Consensus        12 aIDGpagsGKsT~ak~lA~~l~~~~--ldtG~~YR~   45 (217)
T Consensus        34 LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~kP   69 (305)
T TIGR00635        34 LLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP   69 (305)
T ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCH
T ss_conf             631756874678999999983893267406755475