HHsearch alignment for GI: 254780457 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.04 E-value=0.0004 Score=45.58 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=25.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEECCHHHH
Q ss_conf 89866687789678999999981----783562028999
Q gi|254780457|r 10 IIAIDGTAAAGKGVLSRFIALEY----GFHYLDTGLIYR 44 (217)
Q Consensus 10 iIaIDGpagsGKsT~ak~lA~~l----~~~~ldtG~~YR 44 (217)
T Consensus 358 ~laIIGPSgSGKStLaR~~vG~W~~~~G~VRLDGadl~q 396 (556)
T TIGR01842 358 ALAIIGPSGSGKSTLARILVGIWPPASGSVRLDGADLKQ 396 (556)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHC
T ss_conf 588874786525889878872101356533640334402