HHsearch alignment for GI: 254780457 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=96.80 E-value=0.00076 Score=43.89 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=25.1
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 6668778967899999998178356202
Q gi|254780457|r 13 IDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 13 IDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
T Consensus 41 F~GpRGtGKTS~ARIfAKaLNC~-~~~~ 67 (363)
T TIGR02397 41 FSGPRGTGKTSIARIFAKALNCQ-GPDG 67 (363)
T ss_pred ECCCCCCCHHHHHHHHHHHHCCC-CCCC
T ss_conf 02859976355899999986588-7877