HHsearch alignment for GI: 254780457 and conserved domain: TIGR02788
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=93.46 E-value=0.062 Score=32.48 Aligned_cols=123 Identities=24% Similarity=0.365 Sum_probs=69.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CCCCC-CCC
Q ss_conf 5588189866687789678999999981783562028999998523210111014655333321011124-44444-320
Q gi|254780457|r 5 ESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSN-LDKAQ-LSS 82 (217)
Q Consensus 5 ~~k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~-lr~ 82 (217)
T Consensus 157 ~~knIii~--GGTgSGKTTf~kal~~~-----------------------IP~~ER~iTIED~~E~~~~hhpN~V~L~ys 211 (328)
T TIGR02788 157 SRKNIIIS--GGTGSGKTTFLKALVKE-----------------------IPKDERLITIEDTRELFLPHHPNKVHLFYS 211 (328)
T ss_pred CCCEEEEE--ECCCCHHHHHHHHHHHC-----------------------CCCCCCEEEEEEEECCCCCCCCCEEEEEEC
T ss_conf 38919999--06897189999999732-----------------------762252788852011478889864565534
Q ss_pred HHHHCCCCCCCHHHHHHHHH-----------------HHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 12100111122057899998-----------------8788887630388462064125566303886899844888899
Q gi|254780457|r 83 NAIANVASQVASIDSVRDAL-----------------IDIQRSFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRA 145 (217)
Q Consensus 83 ~~I~~~~S~iA~~p~VR~~l-----------------~~~Qr~~~~~~~g~V~EGRDigTvVfPdA~~KifL~As~e~RA 145 (217)
T Consensus 212 k~v~~g~~~vt~~~Ll~scLRMrPDRI~LgELRG~Eaf~F~~~~nsGHpGsiT------T-----------~HA~s~~~A 274 (328)
T TIGR02788 212 KGVGQGSAKVTPKDLLESCLRMRPDRILLGELRGDEAFDFIRAVNSGHPGSIT------T-----------VHAGSPEEA 274 (328)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCEE------E-----------EEECCHHHH
T ss_conf 64234435689899999971177405767430332578888752059886056------7-----------871898999
Q ss_pred HHHHHHHHHHH---CCCCHHHHHHHHH
Q ss_conf 99866776521---1135699999999
Q gi|254780457|r 146 RRRYNEMVSRG---EKVDYVKILEDLR 169 (217)
Q Consensus 146 ~RR~~el~~~g---~~~~~~ev~~~i~ 169 (217)
T Consensus 275 f~qla~l~k~s~~g~gL~~~~I~~~~~ 301 (328)
T TIGR02788 275 FEQLALLVKESQAGLGLDYADIVKLLR 301 (328)
T ss_pred HHHHHHHHHCCHHHCCCCHHHHHHHHH
T ss_conf 999999872025435888899997742