HHsearch alignment for GI: 254780457 and conserved domain: TIGR03167
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.60 E-value=0.02 Score=35.45 Aligned_cols=131 Identities=25% Similarity=0.286 Sum_probs=72.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCC
Q ss_conf 18986668778967899999998178356202899999852321011101465533332101112444444320121001
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANV 88 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~ 88 (217)
T Consensus 128 ~~~vl~G~TG~GKT~iL~~L~~~-G~qviDLE-------glAnHRGS~FG~~----------~~----~~Q--------- 176 (311)
T TIGR03167 128 PLIVLGGMTGSGKTELLHALANA-GAQVLDLE-------GLANHRGSSFGAL----------GL----GPQ--------- 176 (311)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-CCCCCCHH-------HHHHCCCCCCCCC----------CC----CCC---------
T ss_conf 76998788887789999999976-99742589-------9863146534688----------88----999---------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE--CCCHHHHHHCCC-------CEEEEEECCHHHHHHHHHHHHHHHHCC-
Q ss_conf 1112205789999887888876303884620--641255663038-------868998448888999986677652111-
Q gi|254780457|r 89 ASQVASIDSVRDALIDIQRSFAQNKLGVILD--GRDIGTIIFPDA-------RIKFYVTASLDIRARRRYNEMVSRGEK- 158 (217)
Q Consensus 89 ~S~iA~~p~VR~~l~~~Qr~~~~~~~g~V~E--GRDigTvVfPdA-------~~KifL~As~e~RA~RR~~el~~~g~~- 158 (217)
T Consensus 177 ---Ps-Qk~FEn~l~~~l~~~-~~~~~i~vE~ES~~IG~~~iP~~l~~~M~~a~~i~i~~~le~Rv~~l~~~Y~~~~~~~ 251 (311)
T TIGR03167 177 ---PS-QKRFENALAEALRRL-DPGRPIFVEDESRRIGRVALPDALFEAMRAAPLVELEASLEERVERLVEEYAGFEEDP 251 (311)
T ss_pred ---CC-HHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf ---78-999999999999817-8889569960331305713899999998519989998999999999999863043369
Q ss_pred CCHHHHHHHHHHHHHHC
Q ss_conf 35699999999985610
Q gi|254780457|r 159 VDYVKILEDLRNRDNQD 175 (217)
Q Consensus 159 ~~~~ev~~~i~~RD~~D 175 (217)
T Consensus 252 ~~l~~~l~~i~krlG~~ 268 (311)
T TIGR03167 252 EFLAAALERIRKRLGGE 268 (311)
T ss_pred HHHHHHHHHHHHHCCHH
T ss_conf 99999999999864999