HHsearch alignment for GI: 254780457 and conserved domain: cd00227
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.94 E-value=0.00072 Score=44.03 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=80.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEECCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHC
Q ss_conf 189866687789678999999981783562028-9999985232101110146553333210111244444432012100
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGL-IYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIAN 87 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~-~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~ 87 (217)
T Consensus 3 ~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~~~--------~p-------~~~---~~~--~~~~~~~~-~--- 58 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA--------LP-------LKC---QDA--EGGIEFDG-D--- 58 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHH--------CC-------CCC---CCC--CCCCCCCC-C---
T ss_conf 499986899898899999999847675688418589886--------76-------313---687--54223487-7---
Q ss_pred CCCCCCHHHHHHHHHHHHHHH---HHHHCCCEEEEC----C----CHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 111122057899998878888---763038846206----4----12556630388-68998448888999986677652
Q gi|254780457|r 88 VASQVASIDSVRDALIDIQRS---FAQNKLGVILDG----R----DIGTIIFPDAR-IKFYVTASLDIRARRRYNEMVSR 155 (217)
Q Consensus 88 ~~S~iA~~p~VR~~l~~~Qr~---~~~~~~g~V~EG----R----DigTvVfPdA~-~KifL~As~e~RA~RR~~el~~~ 155 (217)
T Consensus 59 --~~~~~g~~~~~~~~~~~~~iaa~a~aG~nvIvD~v~~~~~~l~d~~-~~L~g~~v~~VGV~C~l~~l~~RE~~----R 131 (175)
T cd00227 59 --GGVSPGPEFRLLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCW-RSFVGLDVLWVGVRCPGEVAEGRETA----R 131 (175)
T ss_pred --CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHH-HHHCCCCEEEEEEECCHHHHHHHHHH----C
T ss_conf --6635415699999999999999997799889863123808899999-98579927999987899999999874----5
Q ss_pred HCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 111-3569999999998561023675785379973999778989899999999999
Q gi|254780457|r 156 GEK-VDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLI 210 (217)
Q Consensus 156 g~~-~~~~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~ev~~~i~~~I 210 (217)
T Consensus 132 gDR~~G-------~A~~q~---~~VH~~~--~YD-leVDTs~~sp~eCA~~I~~~l 174 (175)
T cd00227 132 GDRVPG-------QARKQA---RVVHAGV--EYD-LEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred CCCCCC-------HHHHHH---HHHHCCC--CCC-EEEECCCCCHHHHHHHHHHHH
T ss_conf 899964-------678899---9843599--885-687799999999999999971