HHsearch alignment for GI: 254780457 and conserved domain: cd00464
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.78 E-value=2.1e-07 Score=65.09 Aligned_cols=144 Identities=22% Similarity=0.301 Sum_probs=74.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 98666877896789999999817835620289999985232101110146553333210111244444432012100111
Q gi|254780457|r 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVAS 90 (217)
Q Consensus 11 IaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~YR~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lr~~~I~~~~S 90 (217)
T Consensus 2 I~LiG~~G~GKstigk~la~~l~~~fiD~D~~Ie~~~------g~si~eif~--~~-------G---------------- 50 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRA------GMSIPEIFA--EE-------G---------------- 50 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHH------CCCHHHHHH--HC-------C----------------
T ss_conf 8998899998899999999997989796859999994------999999998--74-------9----------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHH-------HHCCCCEEEEEECCHHHHHHHHHHHHHHHH--CCCCH
Q ss_conf 122057899998878888763038846206412556-------630388689984488889999866776521--11356
Q gi|254780457|r 91 QVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTI-------IFPDARIKFYVTASLDIRARRRYNEMVSRG--EKVDY 161 (217)
Q Consensus 91 ~iA~~p~VR~~l~~~Qr~~~~~~~g~V~EGRDigTv-------VfPdA~~KifL~As~e~RA~RR~~el~~~g--~~~~~ 161 (217)
T Consensus 51 ----e~~FR~~E~~~l~~~~~~~~~VIs~GG--G~v~~~~~~~~l~~~~~vI~L~~~~~~l~~Rl~~~-~~RPll~~~~~ 123 (154)
T cd00464 51 ----EEGFRELEREVLLLLLTKENAVIATGG--GAVLREENRRLLLENGIVVWLDASPEELLERLARD-KTRPLLQDEDP 123 (154)
T ss_pred ----HHHHHHHHHHHHHHHHCCCCEEEECCC--CCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHCC-CCCCCCCCCCH
T ss_conf ----387899999999998568985997389--73368999999995790899957999999996079-99998889999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 9999999998561023675785379973999778989899
Q gi|254780457|r 162 VKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGT 201 (217)
Q Consensus 162 ~ev~~~i~~RD~~D~~R~~sPL~~a~DAi~IDTs~lsi~e 201 (217)
T Consensus 124 ~~l~~l~~~R~~~--Y~~~-----A-d-~~i~~~~~s~~e 154 (154)
T cd00464 124 ERLRELLEEREPL--YREV-----A-D-LTIDTDELSPEE 154 (154)
T ss_pred HHHHHHHHHHHHH--HHHH-----C-C-EEEECCCCCCCC
T ss_conf 9999999999999--9987-----9-9-999798989996