HHsearch alignment for GI: 254780457 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.55 E-value=0.071 Score=32.10 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 18986668778967899999998178
Q gi|254780457|r 9 IIIAIDGTAAAGKGVLSRFIALEYGF 34 (217)
Q Consensus 9 ~iIaIDGpagsGKsT~ak~lA~~l~~ 34 (217)
T Consensus 26 ~nIlIsG~tGSGKTTll~al~~~i~~ 51 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 98999899999899999999961334