HHsearch alignment for GI: 254780457 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.74 E-value=0.029 Score=34.48 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=25.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 881898666877896789999999817835620289
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
T Consensus 25 ~Gei~~liG~nGaGKSTLl~~i~---Gl~~p~~G~I 57 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIM---GLLPPRSGSI 57 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---CCCCCCCEEE
T ss_conf 99899999999985999999997---7988996099