HHsearch alignment for GI: 254780457 and conserved domain: cd03238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.76 E-value=0.03 Score=34.32 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=18.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 88189866687789678999999
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIA 29 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA 29 (217)
T Consensus 20 ~Ge~~~iiG~nGsGKSTLl~~~~ 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 99899999999998999999888