>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

Probab=94.50  E-value=0.035  Score=33.98  Aligned_cols=32  Identities=22%  Similarity=0.242  Sum_probs=24.5

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf             81898666877896789999999817835620289
Q gi|254780457|r    8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI   42 (217)
Q Consensus         8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~   42 (217)
T Consensus        28 Gei~~llG~NGaGKSTLl~~i~Gl---~~p~~G~I   59 (220)
T cd03263          28 GEIFGLLGHNGAGKTTTLKMLTGE---LRPTSGTA   59 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC---CCCCCCCE
T ss_conf             959999989997399999999669---87889977