HHsearch alignment for GI: 254780457 and conserved domain: cd03271
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.72 E-value=0.03 Score=34.33 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=16.6
Q ss_pred CEEEEEECCCCCCHHHHHHH
Q ss_conf 81898666877896789999
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRF 27 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~ 27 (217)
T Consensus 21 G~~~aIiG~sGsGKSTLl~~ 40 (261)
T cd03271 21 GVLTCVTGVSGSGKSSLIND 40 (261)
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 99999987999869999999