HHsearch alignment for GI: 254780457 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.0025 Score=40.83 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=24.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 81898666877896789999999817835620289
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
T Consensus 50 GE~~~ivG~SGsGKSTLLr~i~G---L~~p~~G~I 81 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINR---LIEPTSGKV 81 (269)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC---CCCCCCEEE
T ss_conf 99999998998489999999975---999997599