HHsearch alignment for GI: 254780457 and conserved domain: cd03296
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.52 E-value=0.0019 Score=41.46 Aligned_cols=30 Identities=37% Similarity=0.618 Sum_probs=24.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECC
Q ss_conf 818986668778967899999998178356202
Q gi|254780457|r 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTG 40 (217)
Q Consensus 8 ~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG 40 (217)
T Consensus 28 Ge~~~iiGpSGsGKSTll~~i~---Gl~~p~~G 57 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIA---GLERPDSG 57 (239)
T ss_pred CCEEEEECCCCCHHHHHHHHHH---CCCCCCCE
T ss_conf 9899999999977999999997---69999863