HHsearch alignment for GI: 254780457 and conserved domain: cd03298
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.0039 Score=39.66 Aligned_cols=33 Identities=39% Similarity=0.578 Sum_probs=25.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
Q ss_conf 881898666877896789999999817835620289
Q gi|254780457|r 7 QSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLI 42 (217)
Q Consensus 7 k~~iIaIDGpagsGKsT~ak~lA~~l~~~~ldtG~~ 42 (217)
T Consensus 23 ~Ge~~~ilGpSGsGKSTLl~li~---Gl~~p~sG~I 55 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIA---GFETPQSGRV 55 (211)
T ss_pred CCCEEEEECCCCCHHHHHHHHHH---CCCCCCCEEE
T ss_conf 99899999999955999999997---6999885299